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Are the duplication cost and Robinson-Foulds distance equivalent?
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
title
Are the duplication cost and Robinson-Foulds distance equivalent?
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
author name string
Yu Zheng
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
Louxin Zhang
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
publication date
2 July 2014
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stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
published in
Journal of Computational Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
volume
21
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
issue
8
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stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
page(s)
578-590
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
cites work
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Consensus properties for the deep coalescence problem and their application for scalable tree search
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Fast and accurate methods for phylogenomic analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Species tree inference by minimizing deep coalescences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Broad phylogenomic sampling improves resolution of the animal tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Inferring angiosperm phylogeny from EST data with widespread gene duplication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Distinguishing Homologous from Analogous Proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Relationships between gene trees and species trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
5 July 2018
Maximizing Deep Coalescence Cost
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Exact solutions for species tree inference from discordant gene trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Mathematical properties of the deep coalescence cost.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Inferring optimal species trees under gene duplication and loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Terraces in phylogenetic tree space
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Linear-time algorithms for the multiple gene duplication problems.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
The gene-duplication problem: near-linear time algorithms for NNI-based local searches.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
STEM: species tree estimation using maximum likelihood for gene trees under coalescence.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Bayesian estimation of concordance among gene trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4116105
retrieved
29 October 2018
Identifiers
DOI
10.1089/CMB.2014.0021
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
DBLP publication ID
journals/jcb/ZhengZ14
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
4116105
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
PubMed ID
24988427
1 reference
stated in
Europe PubMed Central
PubMed ID
24988427
retrieved
30 July 2017
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