(Q34094894)

31 July 2017

Fast and accurate methods for phylogenomic analyses (English)

1 reference

31 July 2017

1 reference

2

Tandy Warnow

1 reference

31 July 2017

Jimmy Yang

1

1 reference

PubMed ID

22152123

31 July 2017

language of work or name

1 reference

5 October 2011

1 reference

31 July 2017

1 reference

31 July 2017

12 Suppl 9

1 reference

31 July 2017

S4

1 reference

Creative Commons Attribution 2.0 Generic

31 July 2017

start time

5 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-s9-s4

0 references

cites work

Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Determining species tree topologies from clade probabilities under the coalescent.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Multiple sequence alignment: a major challenge to large-scale phylogenetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

iGTP: a software package for large-scale gene tree parsimony analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Properties of consensus methods for inferring species trees from gene trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

FastTree 2--approximately maximum-likelihood trees for large alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Bayesian inference of species trees from multilocus data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Species tree inference by minimizing deep coalescences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Gene tree discordance, phylogenetic inference and the multispecies coalescent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Is a new and general theory of molecular systematics emerging?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

MrBayes 3: Bayesian phylogenetic inference under mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Generating samples under a Wright-Fisher neutral model of genetic variation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Rose: generating sequence families.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S4

The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S4

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S4

Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S4

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S9-S4

From gene trees to species trees II: species tree inference by minimizing deep coalescence events.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Consistency properties of species tree inference by minimizing deep coalescences.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Incomplete lineage sorting: consistent phylogeny estimation from multiple loci.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

BEST: Bayesian estimation of species trees under the coalescent model.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Bayesian estimation of concordance among gene trees.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Improvement in the accuracy of multiple sequence alignment program MAFFT.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3283310

Taxon sampling and the accuracy of large phylogenies

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22152123

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-S9-S4

1 reference

31 July 2017

journals/bmcbi/YangW11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1021949241

0 references

Fatcat ID

release_rmt6g6bhyncobgakt2gcht6zzy

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rmt6g6bhyncobgakt2gcht6zzy

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3283310

1 reference

31 July 2017

1 reference

PubMed ID

22152123