(Q33978601)

30 July 2017

title

Overview of the transcriptome profiles identified in hagfish, shark, and bichir: current issues arising from some nonmodel vertebrate taxa (English)

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30 July 2017

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13

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30 July 2017

Masaki Takechi

1

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30 July 2017

Masaki Takeuchi

2

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30 July 2017

Kinya G Ota

3

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30 July 2017

Osamu Nishimura

4

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30 July 2017

Makoto Mochii

5

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30 July 2017

Kazu Itomi

6

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30 July 2017

Noritaka Adachi

7

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30 July 2017

Maiko Takahashi

8

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30 July 2017

Satoko Fujimoto

9

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30 July 2017

Hiroshi Tarui

10

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30 July 2017

Masataka Okabe

11

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30 July 2017

Shinichi Aizawa

12

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30 July 2017

language of work or name

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1 August 2011

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Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution

30 July 2017

published in

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30 July 2017

volume

316

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30 July 2017

issue

7

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30 July 2017

page(s)

526-546

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Bmp4 and Morphological Variation of Beaks in Darwin's Finches

30 July 2017

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Tangentially migrating GABAergic cells of subpallial origin invade massively the pallium in developing sharks.

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Hierarchy revealed in the specification of three skeletal fates by Sox9 and Runx2.

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Skeletogenesis in the swell shark Cephaloscyllium ventriosum

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Digital gene expression analysis of the zebra finch genome

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VegT activation of Sox17 at the midblastula transition alters the response to nodal signals in the vegetal endoderm domain

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Expression of the homeobox gene Pitx2 in neural crest is required for optic stalk and ocular anterior segment development.

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The evolutionary origin of nodal-related genes in teleosts.

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Zebrafish organizer development and germ-layer formation require nodal-related signals

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Developmental origin of shark electrosensory organs.

21 January 2018

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Evidence that mechanisms of fin development evolved in the midline of early vertebrates.

21 January 2018

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Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain

21 January 2018

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Bayesian phylogenetic analysis supports monophyly of ambulacraria and of cyclostomes.

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A degenerate ParaHox gene cluster in a degenerate vertebrate

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Dealing with incongruence in phylogenomic analyses

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A lamprey from the Devonian period of South Africa

21 January 2018

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The evolution of gnathostome development: Insight from chondrichthyan embryology.

21 January 2018

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Shared developmental mechanisms pattern the vertebrate gill arch and paired fin skeletons

21 January 2018

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Localization of transcripts of the zebrafish morphogen Squint is dependent on egg activation and the microtubule cytoskeleton

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The zebrafish dorsal axis is apparent at the four-cell stage.

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Gnathostome phylogenomics utilizing lungfish EST sequences

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Cell-autonomous action of zebrafish spt-1 mutation in specific mesodermal precursors

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Amphioxus and the evolution of head segmentation

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

CAP3: A DNA sequence assembly program

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A new time-scale for ray-finned fish evolution

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish".

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Variations of cervical vertebrae after expression of a Hox-1.1 transgene in mice.

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

21 January 2018

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Squinting at the zebrafish axis

21 January 2018

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Indeterminate cell lineage of the zebrafish embryo

21 January 2018

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A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Germ line-restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish (Eptatretus okinoseanus).

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Insights into cyclostome phylogenomics: pre-2R or post-2R.

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Palaeophylogenomics of the vertebrate ancestor--impact of hidden paralogy on hagfish and lamprey gene phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Monophyly of Lampreys and Hagfishes Supported by Nuclear DNA–Coded Genes

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark.

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Craniofacial development and the evolution of the vertebrates: the old problems on a new background

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Is the vertebrate head segmented?-evolutionary and developmental considerations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Hagfish (cyclostomata, vertebrata): searching for the ancestral developmental plan of vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Primitive versus derived traits in the developmental program of the vertebrate head: views from cyclostome developmental studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Developmental morphology of the head mesoderm and reevaluation of segmental theories of the vertebrate head: evidence from embryos of an agnathan vertebrate, Lampetra japonica

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Lamprey contractile protein genes mark different populations of skeletal muscles during development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A new origin for the maxillary jaw.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A new long form of Sox5 (L-Sox5), Sox6 and Sox9 are coexpressed in chondrogenesis and cooperatively activate the type II collagen gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The origin of the vertebrate jaw: neoclassical ideas versus newer, development-based ideas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

CDD: specific functional annotation with the Conserved Domain Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Conservation and divergence of BMP2/4 genes in the lamprey: expression and phylogenetic analysis suggest a single ancestral vertebrate gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Importance of SoxE in neural crest development and the evolution of the pharynx

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Morphogenesis of the cranial segments and distribution of neural crest in the embryos of the snapping turtle, Chelydra serpentina

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Metameric pattern development in the embryonic axis of the mouse. I. Differentiation of the cranial segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Mesenchyme-dependent BMP signaling directs the timing of mandibular osteogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Molecular mechanisms of cranial neural crest cell migration and patterning in craniofacial development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Skeletogenesis in Xenopus tropicalis: characteristic bone development in an anuran amphibian

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Requirements for Endothelin type-A receptors and Endothelin-1 signaling in the facial ectoderm for the patterning of skeletogenic neural crest cells in zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

RNA of AmVegT, the axolotl orthologue of the Xenopus meso-endodermal determinant, is not localized in the oocyte.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Status of RNAs, localized in Xenopus laevis oocytes, in the frogs Rana pipiens and Eleutherodactylus coqui

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The differentiation and morphogenesis of craniofacial muscles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Historical hypotheses regarding segmentation of the vertebrate head

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The origin of the parathyroid gland

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A molecular analysis of neurogenic placode and cranial sensory ganglion development in the shark, Scyliorhinus canicula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The history of scientific endeavors towards understanding hagfish embryology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Developmental biology of hagfishes, with a report on newly obtained embryos of the Japanese inshore hagfish, Eptatretus burgeri

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Hagfish embryology with reference to the evolution of the neural crest.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Endothelin-1 regulates the dorsoventral branchial arch patterning in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Prototypic T cell receptor and CD4-like coreceptor are expressed by lymphocytes in the agnathan sea lamprey

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Variable lymphocyte receptors in hagfish

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Analysis and functional annotation of expressed sequence tags from in vitro cell lines of elasmobranchs: Spiny dogfish shark (Squalus acanthias) and little skate (Leucoraja erinacea)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Comparative analysis of Xenopus VegT, the meso-endodermal determinant, identifies an unusual conserved sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Evo-devo: the evolution of a new discipline

21 January 2018

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https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Gata5 is required for the development of the heart and endoderm in zebrafish.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

About face: signals and genes controlling jaw patterning and identity in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The structure and organization of lamprin genes: multiple-copy genes with alternative splicing and convergent evolution with insect structural proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Development of the cerebellar body in sharks: spatiotemporal relations of Pax6 expression, cell proliferation and differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Characterization of the zebrafish tbx16 gene and evolution of the vertebrate T-box family

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Eomesodermin, a key early gene in Xenopus mesoderm differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Distinct regulatory cascades govern extraocular and pharyngeal arch muscle progenitor cell fates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Cranial neural crest and the building of the vertebrate head

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

An endothelin-1 switch specifies maxillomandibular identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Ectodermally derived FGF8 defines the maxillomandibular region in the early chick embryo: epithelial-mesenchymal interactions in the specification of the craniofacial ectomesenchyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Heterotopic shift of epithelial-mesenchymal interactions in vertebrate jaw evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Programmed loss of millions of base pairs from a vertebrate genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Genome trees and the nature of genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The BMP antagonists Chordin and Noggin have essential but redundant roles in mouse mandibular outgrowth

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Evolution of Otx paralogue usages in early patterning of the vertebrate head.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Transcriptome analysis of hagfish leukocytes: a framework for understanding the immune system of jawless fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

History of studies on mammalian middle ear evolution: a comparative morphological and developmental biology perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The genus Polypterus (bichirs): a fish group diverged at the stem of ray-finned fishes (Actinopterygii).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Whole-mount in situ hybridization of bichir (Polypterus) embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Germ layer patterning in bichir and lamprey; an insight into its evolution in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Fin development in a cartilaginous fish and the origin of vertebrate limbs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Ancient noncoding elements conserved in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Maternal control of pattern formation in Xenopus laevis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Cartilage in the Atlantic hagfish, Myxine glutinosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

The unusual cartilaginous tissues of jawless craniates, cephalochordates and invertebrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Molecular shaping of the beak

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Morphoregulation of avian beaks: comparative mapping of growth zone activities and morphological evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Targeted deletion of a branchial arch-specific enhancer reveals a role of dHAND in craniofacial development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Competent stripes for diverse positions of limbs/fins in gnathostome embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Genomic analysis of expressed sequence tags in American black bear Ursus americanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

A compact cartilaginous fish model genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Maternal nodal and zebrafish embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

Agnathans and the origin of jawed vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21427

21 January 2018

Identifiers

DOI

10.1002/JEZ.B.21427

1 reference

30 July 2017

1 reference