(Q33984893)

30 July 2017

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title

Emerging knowledge from genome sequencing of crop species (English)

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30 July 2017

main subject

whole genome sequencing

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Delfina Barabaschi

1

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30 July 2017

Davide Guerra

2

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30 July 2017

Katia Lacrima

3

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30 July 2017

Paolo Laino

4

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30 July 2017

Vania Michelotti

5

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30 July 2017

Simona Urso

6

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30 July 2017

Giampiero Valè

7

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30 July 2017

Luigi Cattivelli

8

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30 July 2017

publication date

1 March 2012

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30 July 2017

published in

Molecular Biotechnology

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30 July 2017

volume

50

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30 July 2017

issue

3

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30 July 2017

page(s)

250-266

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

30 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The map-based sequence of the rice genome

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

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Eukaryotic genome size databases

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

High throughput DNA sequencing: The new sequencing revolution.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The genome of the cucumber, Cucumis sativus L

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Crop genome sequencing: lessons and rationales

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The impact of whole genome sequencing on model system genetics: get ready for the ride

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Chromosome-based genomics in the cereals

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Comparative genetics in the grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Palaeogenomics of plants: synteny-based modelling of extinct ancestors

21 January 2018

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https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Insights from the comparison of plant genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Palaeogenomics in cereals: modeling of ancestors for modern species improvement

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

How and why chromosome inversions evolve

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genome sequence of the palaeopolyploid soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genome sequence and analysis of the tuber crop potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Polyploidy, Hybridization, and the Invasion of New Habitats

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genomic and expression plasticity of polyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Structure and expression analysis of rice paleo duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The Sorghum bicolor genome and the diversification of grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The evolutionary dynamics of plant duplicate genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Molecular evolution of two duplicated CDPK genes CPK7 and CPK12 in grass species: a case study in wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Molecular evolution of the duplicated TFIIAgamma genes in Oryzeae and its relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The evolutionary significance of ancient genome duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Gene duplication and evolutionary novelty in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The Future of Rice Genomics: Sequencing the Collective Oryza Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Mapping and sequencing of structural variation from eight human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

A triptych of the evolution of plant transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The genome of woodland strawberry (Fragaria vesca)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Considering transposable element diversification in de novo annotation approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Increased expression and protein divergence in duplicate genes is associated with morphological diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Helitrons on a roll: eukaryotic rolling-circle transposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Plant genome organisation and diversity: the year of the junk!

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Epigenetic regulation of transposable elements in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Conserved themes in small-RNA-mediated transposon control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Impact of transposable elements on the organization and function of allopolyploid genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The give-and-take of DNA: horizontal gene transfer in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Transposable elements and the plant pan-genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Evolution of DNA sequence nonhomologies among maize inbreds

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The impact of the species-area relationship on estimates of paleodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Advances in cereal genomics and applications in crop breeding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Sequencing breakthroughs for genomic ecology and evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

A first-generation haplotype map of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Getting domestication straight: ramosa1 in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Association mapping: critical considerations shift from genotyping to experimental design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

SNP discovery by high-throughput sequencing in soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

High-throughput genotyping by whole-genome resequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genome-wide association studies of 14 agronomic traits in rice landraces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Rapid genomic characterization of the genus vitis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

High-throughput detection of induced mutations and natural variation using KeyPoint technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genomics and the future of conservation genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genome-wide patterns of genetic variation among elite maize inbred lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Three sequenced legume genomes and many crop species: rich opportunities for translational genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The Palomero genome suggests metal effects on domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Fast-forward genetics enabled by new sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Plant genome sequencing: applications for crop improvement

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Genomic resources in horticultural crops: status, utility and challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Draft genome sequence of the oilseed species Ricinus communis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

The genome of Theobroma cacao

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Journey through the past: 150 million years of plant genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Grapevine genetics after the genome sequence: Challenges and limitations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12033-011-9443-1

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

21 January 2018

1 reference

12 December 2020

Small RNAs, DNA methylation and transposable elements in wheat

1 reference

12 December 2020

Grass genome organization and evolution

1 reference

12 December 2020

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.

1 reference

12 December 2020

A unified classification system for eukaryotic transposable elements

1 reference

12 December 2020

The bacterial pan-genome:a new paradigm in microbiology.

1 reference

12 December 2020

The Genomes of Oryza sativa: a history of duplications

1 reference

12 December 2020

Transcriptional profiling in response to terminal drought stress reveals differential responses along the wheat genome

1 reference

12 December 2020

Revisiting horizontal transfer of transposable elements in Drosophila

1 reference

12 December 2020

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

1 reference

12 December 2020

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing

1 reference

12 December 2020

10.1007/S12033-011-9443-1

Identifiers

DOI

1 reference

30 July 2017

1 reference