(Q33995525)

30 July 2017

Universally distributed single-copy genes indicate a constant rate of horizontal transfer (English)

1 reference

30 July 2017

Christopher J. Creevey

series ordinal

1

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30 July 2017

3

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30 July 2017

5

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30 July 2017

Jeroen Raes

4

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Tobias Doerks

series ordinal

2

object named as

Tobias Doerks

1 reference

PubMed ID

21850220

30 July 2017

language of work or name

English

0 references

publication date

5 August 2011

1 reference

30 July 2017

1 reference

30 July 2017

6

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30 July 2017

8

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30 July 2017

e22099

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Creative Commons Attribution 4.0 International

30 July 2017

start time

5 August 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Gene and genome trees conflict at many levels.

5 July 2018

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

5 July 2018

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Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

5 July 2018

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Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms

5 July 2018

1 reference

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Complexity, connectivity, and duplicability as barriers to lateral gene transfer

5 July 2018

1 reference

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The power of phylogenetic approaches to detect horizontally transferred genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Global extent of horizontal gene transfer

5 July 2018

1 reference

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Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

5 July 2018

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Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

STRING 7--recent developments in the integration and prediction of protein interactions

5 July 2018

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5 July 2018

The tree of one percent.

1 reference

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Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

5 July 2018

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The supermatrix approach to systematics

5 July 2018

1 reference

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

5 July 2018

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Genome trees and the nature of genome evolution

5 July 2018

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Mechanisms of, and barriers to, horizontal gene transfer between bacteria

5 July 2018

1 reference

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

5 July 2018

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Clann: investigating phylogenetic information through supertree analyses

5 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

5 July 2018

1 reference

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Obtaining maximal concatenated phylogenetic data sets from large sequence databases

5 July 2018

1 reference

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Evolution of photosynthetic prokaryotes: a maximum-likelihood mapping approach

5 July 2018

1 reference

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Ancient horizontal gene transfer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes

5 July 2018

1 reference

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

5 July 2018

1 reference

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Phylogenetic analysis reveals multiple lateral transfers of adenosine-5'-phosphosulfate reductase genes among sulfate-reducing microorganisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Horizontal gene transfer in bacterial and archaeal complete genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

5 July 2018

1 reference

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Phylogenetic classification and the universal tree

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Horizontal gene transfer among genomes: the complexity hypothesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151239

Horizontal gene transfer accelerates genome innovation and evolution.

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

Genome-wide experimental determination of barriers to horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

Compensatory evolution in response to a novel RNA polymerase: orthologous replacement of a central network gene.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

Inferring confidence sets of possibly misspecified gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

21 January 2018

1 reference

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Non-orthologous gene displacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022099

GeneTRACE-reconstruction of gene content of ancestral species

21 January 2018

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12 December 2020

Non-orthologous gene displacement

1 reference

12 December 2020

DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION

1 reference

12 December 2020

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0022099

Identifiers

DOI

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

21850220