(Q33996053)

30 July 2017

title

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data (English)

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30 July 2017

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30 July 2017

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Uwe Ohler

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30 July 2017

5

Rebecca L Skalsky

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30 July 2017

4

Eva Gottwein

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30 July 2017

Stoyan Georgiev

2

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30 July 2017

Jack D Keene

series ordinal

6

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30 July 2017

publication date

18 August 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

issue

8

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30 July 2017

page(s)

R79

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https://scigraph.springernature.com/pub.10.1186/gb-2011-12-8-r79

30 July 2017

exact match

0 references

cites work

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5 July 2018

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5 July 2018

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

5 July 2018

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

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5 July 2018

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Spatial preferences of microRNA targets in 3' untranslated regions

5 July 2018

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5 July 2018

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5 July 2018

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Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

5 July 2018

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5 July 2018

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5 July 2018

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Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

5 July 2018

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5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

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5 July 2018

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5 July 2018

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Target RNA motif and target mRNAs of the Quaking STAR protein

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

5 July 2018

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5 July 2018

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Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

MicroRNAs: genomics, biogenesis, mechanism, and function

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

5 July 2018

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R79

CLIP identifies Nova-regulated RNA networks in the brain

21 January 2018

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5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

A PUF family portrait: 3'UTR regulation as a way of life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

PUM2, a novel murine puf protein, and its consensus RNA-binding site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

Regulatory element detection using correlation with expression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

The value of prior knowledge in discovering motifs with MEME

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3302668

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R79

Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R79

PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R79

21 January 2018

Identifiers

DOI

10.1186/GB-2011-12-8-R79

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference