(Q33998296)

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Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (English)

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Europe PubMed Central

PubMed publication ID

30 July 2017

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comparative genomics

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based on heuristic

inferred from title

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Scott V. Edwards

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30 July 2017

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Erich D Jarvis

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30 July 2017

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Hans Ellegren

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30 July 2017

Osceola Whitney

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Osceola Whitney

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30 July 2017

Barney A. Schlinger

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Barney A Schlinger

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30 July 2017

Wesley C Warren

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Wesley C Warren

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30 July 2017

Niclas Backström

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Niclas Backström

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30 July 2017

author name string

Axel Künstner

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30 July 2017

Jochen B W Wolf

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30 July 2017

Christopher N Balakrishnan

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30 July 2017

Lainy Day

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30 July 2017

Daniel E Janes

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30 July 2017

Richard K Wilson

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30 July 2017

publication date

1 March 2010

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30 July 2017

Molecular Ecology

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30 July 2017

19 Suppl 1

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30 July 2017

266-276

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30 July 2017

Sequencing breakthroughs for genomic ecology and evolutionary biology

1 reference

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Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection

1 reference

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Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment.

1 reference

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Hotspots of biased nucleotide substitutions in human genes

1 reference

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1 reference

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The population genetics of dN/dS

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RNA-Seq: a revolutionary tool for transcriptomics

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Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

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Both selective and neutral processes drive GC content evolution in the human genome

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Genetic basis of fitness differences in natural populations

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Toward a selection theory of molecular evolution

1 reference

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

1 reference

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No effect of recombination on the efficacy of natural selection in primates

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

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Genetics of global gene expression

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Strong regional biases in nucleotide substitution in the chicken genome.

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1 reference

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12 December 2020

based on heuristic

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/J.1365-294X.2009.04487.X

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

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