(Q34000976)

30 July 2017

title

The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation (English)

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30 July 2017

3

Linda Petzold

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30 July 2017

Brian Drawert

1

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30 July 2017

Michael J Lawson

series ordinal

2

1 reference

30 July 2017

Mustafa Khammash

series ordinal

4

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30 July 2017

language of work or name

English

0 references

publication date

1 February 2010

1 reference

Journal of Chemical Physics

30 July 2017

published in

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30 July 2017

volume

132

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30 July 2017

issue

7

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30 July 2017

page(s)

074101

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Modeling robustness tradeoffs in yeast cell polarization induced by spatial gradients

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

The multinomial simulation algorithm for discrete stochastic simulation of reaction-diffusion systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Stochastic simulation of chemical kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Noise-induced Min phenotypes in E. coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Stochastic model for Soj relocation dynamics in Bacillus subtilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Stochastic reaction-diffusion simulation with MesoRD.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Stochastic gene expression in a single cell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

The importance of being discrete: life always wins on the surface

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Stochastic mechanisms in gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905448

Pattern Formation inside Bacteria: Fluctuations due to the Low Copy Number of Proteins

5 July 2018

1 reference

The finite state projection algorithm for the solution of the chemical master equation

21 January 2018

1 reference

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.

21 January 2018

1 reference

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

21 January 2018

1 reference

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.

21 January 2018

1 reference

Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli

21 January 2018

1 reference

Efficient formulation of the stochastic simulation algorithm for chemically reacting systems

21 January 2018

1 reference

Reduction and solution of the chemical master equation using time scale separation and finite state projection

21 January 2018

1 reference

Logical basis for information theory and probability theory

21 January 2018

1 reference

A rigorous derivation of the chemical master equation

21 January 2018

1 reference

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

Approximate accelerated stochastic simulation of chemically reacting systems

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.3310809

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30 July 2017

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30 July 2017

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