(Q34004487)

30 July 2017

title

A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data (English)

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30 July 2017

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Daniel A Skelly

1

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Joshua M. Akey

series ordinal

5

object named as

Joshua M Akey

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30 July 2017

Marnie Johansson

2

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30 July 2017

Jennifer Madeoy

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3

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30 July 2017

Jon Wakefield

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4

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30 July 2017

publication date

26 August 2011

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30 July 2017

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30 July 2017

volume

21

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30 July 2017

issue

10

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30 July 2017

page(s)

1728-1737

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Integrating common and rare genetic variation in diverse human populations

30 July 2017

cites work

1 reference

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5 July 2018

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Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

5 July 2018

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5 July 2018

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

5 July 2018

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5 July 2018

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Global patterns of cis variation in human cells revealed by high-density allelic expression analysis

5 July 2018

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Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing

5 July 2018

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Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

5 July 2018

1 reference

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Allele-specific expression assays using Solexa

5 July 2018

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5 July 2018

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Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human

5 July 2018

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

5 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

5 July 2018

1 reference

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Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression

5 July 2018

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

5 July 2018

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Genetics of global gene expression

5 July 2018

1 reference

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Analysis of allelic differential expression in human white blood cells

5 July 2018

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5 July 2018

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Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

5 July 2018

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Aligning multiple genomic sequences with the threaded blockset aligner

5 July 2018

1 reference

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A survey of genetic and epigenetic variation affecting human gene expression

5 July 2018

1 reference

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Allelic variation in gene expression is common in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202289

Statistical significance for genomewide studies

5 July 2018

1 reference

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In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading

5 July 2018

1 reference

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Genetic dissection of transcriptional regulation in budding yeast

5 July 2018

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5 July 2018

1 reference

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Localization of a gene for non-syndromic hearing loss (DFNA5) to chromosome 7p15.

5 July 2018

1 reference

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Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals

5 July 2018

1 reference

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Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty

5 July 2018

1 reference

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A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli

5 July 2018

1 reference

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A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae

5 July 2018

1 reference

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Evolution at two levels in humans and chimpanzees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202289

Evolutionary changes in cis and trans gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202289

Cis-acting variation in the expression of a high proportion of genes in human brain

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202289

Detection of regulatory variation in mouse genes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202289

29 October 2018

Identifiers

DOI

10.1101/GR.119784.110

1 reference

30 July 2017

1 reference

30 July 2017

1 reference