(Q34005408)

English

Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile.

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Clostridium difficile

0 references

Philip Warburton

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Michael S M Brouwer

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Peter Mullany

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Elaine Allan

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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publication date

18 August 2011

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

e23014

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

copyright license

Creative Commons Attribution 4.0 International

18 August 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Genetic evidence for a novel interaction between transcriptional activator SoxS and region 4 of the σ(70) subunit of RNA polymerase at class II SoxS-dependent promoters in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Identification of a genetic locus responsible for antimicrobial peptide resistance in Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

The role of toxin A and toxin B in Clostridium difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

The changing epidemiology of Clostridium difficile infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Array comparative hybridisation reveals a high degree of similarity between UK and European clinical isolates of hypervirulent Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Evolutionary dynamics of Clostridium difficile over short and long time scales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Bioinformatics annotation of the hypothetical proteins found by omics techniques can help to disclose additional virulence factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Clinical and microbiological characteristics of community-onset Clostridium difficile infection in The Netherlands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

A modular master on the move: the Tn916 family of mobile genetic elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Revised nomenclature for transposable genetic elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Historical perspectives on studies of Clostridium difficile and C. difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Contribution of exogenous genetic elements to the group A Streptococcus metagenome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Molecular analysis of Clostridium difficile PCR ribotype 027 isolates from Eastern and Western Canada

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Acquired bacitracin resistance in Enterococcus faecalis is mediated by an ABC transporter and a novel regulatory protein, BcrR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Regulation of toxin synthesis in Clostridium difficile by an alternative RNA polymerase sigma factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

A novel toxinotyping scheme and correlation of toxinotypes with serogroups of Clostridium difficile isolates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

SMART, a simple modular architecture research tool: identification of signaling domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Definition of the single integration site of the pathogenicity locus in Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Analysis of compositionally biased regions in sequence databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Nucleotide sequence of the 18-kb conjugative transposon Tn916 from Enterococcus faecalis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Cloning and characterization of a conjugated bile acid hydrolase gene from Clostridium perfringens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Transferable resistance to clindamycin, erythromycin, and tetracycline in Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Sequencing and heterologous expression of the gene encoding penicillin V amidase from Bacillus sphaericus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Identification of Tn4451 and Tn4452, chloramphenicol resistance transposons from Clostridium perfringens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

An intermediate in transposition of the conjugative transposon Tn916.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Genetic analysis of a tetracycline resistance element from Clostridium difficile and its conjugal transfer to and from Bacillus subtilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

A knowledge base for predicting protein localization sites in eukaryotic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Molecular characterization and expression of a gene encoding a Staphylococcus aureus collagen adhesin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

5 July 2018

Pathogenesis of Clostridium difficile infection

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023014

21 January 2018

A modified pulsed-field gel electrophoresis (PFGE) protocol for subtyping previously non-PFGE typeable isolates of Clostridium difficile polymerase chain reaction ribotype 001.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023014

21 January 2018

The large resolvase TnpX is the only transposon-encoded protein required for transposition of the Tn4451/3 family of integrative mobilizable elements.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023014

21 January 2018

Efficient sporulation in Clostridium difficile requires disruption of the σK gene

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023014

21 January 2018

Prediction of protein function improving sequence remote alignment search by a fuzzy logic algorithm.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023014

21 January 2018

The ClosTron: Mutagenesis in Clostridium refined and streamlined.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

29 October 2018

Distribution and antimicrobial susceptibility patterns of Clostridium difficile PCR ribotypes in English hospitals, 2007-08.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3158075

29 October 2018

Transfer of macrolide-lincosamide-streptogramin B (MLS) resistance in Clostridium difficile is linked to a gene homologous with toxin A and is mediated by a conjugative transposon, Tn5398

1 reference

https://pubmed.ncbi.nlm.nih.gov/21876735

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular genetics of the chloramphenicol-resistance transposon Tn4451 from Clostridium perfringens: the TnpX site-specific recombinase excises a circular transposon molecule

1 reference

https://pubmed.ncbi.nlm.nih.gov/21876735

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Domain structure of the Staphylococcus aureus collagen adhesin

1 reference

https://pubmed.ncbi.nlm.nih.gov/21876735

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Generation of an erythromycin-sensitive derivative of Clostridium difficile strain 630 (630Deltaerm) and demonstration that the conjugative transposon Tn916DeltaE enters the genome of this strain at multiple sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/21876735

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ClosTron: a universal gene knock-out system for the genus Clostridium

1 reference

https://pubmed.ncbi.nlm.nih.gov/21876735

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0023014

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

2011PLoSO...623014B

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21876735%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

ResearchGate publication ID

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