(Q34007227)

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Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster (English)

1 reference

Europe PubMed Central

30 July 2017

Drosophila melanogaster

0 references

Laurence D. Hurst

2

1 reference

Europe PubMed Central

30 July 2017

Tobias Warnecke

object named as

Tobias Warnecke

1

0 references

publication date

28 September 2007

1 reference

Europe PubMed Central

30 July 2017

Molecular Biology and Evolution

1 reference

Europe PubMed Central

30 July 2017

24

1 reference

Europe PubMed Central

30 July 2017

2755-2762

1 reference

Europe PubMed Central

30 July 2017

12

1 reference

Europe PubMed Central

30 July 2017

Adaptive evolution of non-coding DNA in Drosophila

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

How did alternative splicing evolve?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Variation in synonymous codon use and DNA polymorphism within the Drosophila genome.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Codon adaptation index as a measure of dominating codon bias.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Hearing silence: non-neutral evolution at synonymous sites in mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

An evaluation of measures of synonymous codon usage bias.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Intragenic codon bias in a set of mouse and human genes.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Evolution of synonymous codon usage in metazoans

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Natural selection affects frequencies of AG and GT dinucleotides at the 5' and 3' ends of exons

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Reduced synonymous substitution rate at the start of enterobacterial genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Single nucleotide polymorphism-based validation of exonic splicing enhancers

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Predictive identification of exonic splicing enhancers in human genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Differing patterns of selection in alternative and constitutive splice sites

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

A systematic analysis of the factors that determine the strength of pre-mRNA splicing enhancers.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Regulation of sex-specific selection of fruitless 5' splice sites by transformer and transformer-2.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Specific SR protein-dependent splicing substrates identified through genomic SELEX.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Recognition of exonic splicing enhancer sequences by the Drosophila splicing repressor RSF1

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Nonrandom intragenic variations in patterns of codon bias implicate a sequential interplay between transitional genetic drift and functional amino acid selection

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Splicing and the evolution of proteins in mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Widespread positive selection in synonymous sites of mammalian genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Why Are Translationally Sub-Optimal Synonymous Codons Used in Escherichia coli?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Translational effects of differential codon usage among intragenic domains of new genes in Drosophila

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Exonic Splicing Regulatory Elements Skew Synonymous Codon Usage near Intron-exon Boundaries in Mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM210

21 January 2018

Identifiers

10.1093/MOLBEV/MSM210

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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