(Q34007251)

30 July 2017

title

DNA-dependent RNA polymerase detects hidden giant viruses in published databanks (English)

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30 July 2017

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5

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Roch Giorgi

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author name string

Vikas Sharma

series ordinal

1

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Pierre Pontarotti

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4

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30 July 2017

publication date

13 June 2014

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Genome Biology and Evolution

30 July 2017

published in

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30 July 2017

volume

6

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30 July 2017

issue

7

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30 July 2017

page(s)

1603-1610

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Molecular studies neglect apparently gram-negative populations in the human gut microbiota

30 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

5 July 2018

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5 July 2018

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Insights into the phylogeny and coding potential of microbial dark matter

5 July 2018

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"Megavirales", a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses

5 July 2018

1 reference

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Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Hyperstability and substrate promiscuity in laboratory resurrections of Precambrian β-lactamases

5 July 2018

1 reference

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Microbial culturomics: paradigm shift in the human gut microbiome study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Directed evolution of sulfotransferases and paraoxonases by ancestral libraries

5 July 2018

1 reference

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

5 July 2018

1 reference

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Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Evolution of multisubunit RNA polymerases in the three domains of life.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4 domain of life including giant viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Viruses in the faecal microbiota of monozygotic twins and their mothers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

The dynamic genome of Hydra

5 July 2018

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

5 July 2018

1 reference

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Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

The rpoB gene as a tool for clinical microbiologists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

TimeTree: a public knowledge-base of divergence times among organisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Diversity of the human intestinal microbial flora

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122926

5 July 2018

Identifiers

DOI

10.1093/GBE/EVU128

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30 July 2017

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30 July 2017

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