(Q34010252)

30 July 2017

title

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling (English)

1 reference

30 July 2017

14

1 reference

30 July 2017

Jason A Steen

13

0 references

Nicole Cloonan

Nicole Cloonan

2

0 references

Melissa Little

Melissa H Little

15

0 references

Sean Grimmond

Sean M Grimmond

16

0 references

Bree A. Rumballe

11

Bree A Rumballe

1 reference

30 July 2017

10

Kylie M Georgas

1 reference

30 July 2017

Rathi D Thiagarajan

1

1 reference

30 July 2017

Brooke B Gardiner

3

1 reference

30 July 2017

Tim R Mercer

4

1 reference

30 July 2017

Gabriel Kolle

5

1 reference

30 July 2017

Ehsan Nourbakhsh

6

1 reference

30 July 2017

Shivangi Wani

7

1 reference

30 July 2017

Dave Tang

8

1 reference

30 July 2017

Keerthana Krishnan

9

1 reference

30 July 2017

Han S Chiu

12

1 reference

30 July 2017

language of work or name

English

0 references

publication date

5 September 2011

1 reference

30 July 2017

1 reference

30 July 2017

volume

12

1 reference

30 July 2017

page(s)

441

1 reference

Dicer regulates the development of nephrogenic and ureteric compartments in the mammalian kidney

30 July 2017

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5 July 2018

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5 July 2018

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Patterning a complex organ: branching morphogenesis and nephron segmentation in kidney development

5 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

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5 July 2018

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Targeted deletion of Dicer from proximal tubules protects against renal ischemia-reperfusion injury.

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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The miR-30 miRNA family regulates Xenopus pronephros development and targets the transcription factor Xlim1/Lhx1

5 July 2018

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Mir-214-dependent regulation of the polycomb protein Ezh2 in skeletal muscle and embryonic stem cells

5 July 2018

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mir-210: a sensor for hypoxic stress during tumorigenesis

5 July 2018

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5 July 2018

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Regulatory roles of natural antisense transcripts

5 July 2018

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Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.

5 July 2018

1 reference

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mRNA-Seq whole-transcriptome analysis of a single cell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

MicroRNA target prediction by expression analysis of host genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

The antisense transcriptomes of human cells

5 July 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

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Atlas of gene expression in the developing kidney at microanatomic resolution

5 July 2018

1 reference

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Regulatory back-up circuit of medaka Wt1 co-orthologs ensures PGC maintenance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Dnm3os, a non-coding RNA, is required for normal growth and skeletal development in mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Transcriptome content and dynamics at single-nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Podocyte-specific deletion of dicer alters cytoskeletal dynamics and causes glomerular disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Six2 defines and regulates a multipotent self-renewing nephron progenitor population throughout mammalian kidney development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Stem cell transcriptome profiling via massive-scale mRNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

The miR-200 family determines the epithelial phenotype of cancer cells by targeting the E-cadherin repressors ZEB1 and ZEB2

5 July 2018

1 reference

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The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

miRBase: tools for microRNA genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Alternately spliced WT1 antisense transcripts interact with WT1 sense RNA and show epigenetic and splicing defects in cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Transgenic over-expression of the microRNA miR-17-92 cluster promotes proliferation and inhibits differentiation of lung epithelial progenitor cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

SOX9 regulates prostaglandin D synthase gene transcription in vivo to ensure testis development.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

The imprinted H19 noncoding RNA is a primary microRNA precursor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

NATsDB: Natural Antisense Transcripts DataBase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Six2 is required for suppression of nephrogenesis and progenitor renewal in the developing kidney

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

The diverse functions of microRNAs in animal development and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Computational expression deconvolution in a complex mammalian organ

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Antisense transcription in the mammalian transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Temporal and spatial transcriptional programs in murine kidney development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Distinct and sequential tissue-specific activities of the LIM-class homeobox gene Lim1 for tubular morphogenesis during kidney development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Novel regulators of kidney development from the tips of the ureteric bud.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

A conserved noncoding intronic transcript at the mouse Dnm3 locus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Natural antisense transcripts associated with genes involved in eye development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Expression of Pax2 in the intermediate mesoderm is regulated by YY1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

MicroRNAs: genomics, biogenesis, mechanism, and function

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

5 July 2018

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Antisense transcripts at the EMX2 locus in human and mouse

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Sonic hedgehog regulates proliferation and differentiation of mesenchymal cells in the mouse metanephric kidney

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Computational discovery of sense-antisense transcription in the human and mouse genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Murine homolog of SALL1 is essential for ureteric bud invasion in kidney development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Differential activities of the RET tyrosine kinase receptor isoforms during mammalian embryogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Changes in global gene expression patterns during development and maturation of the rat kidney

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Nephrin is specifically located at the slit diaphragm of glomerular podocytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Evolutionary conservation and tissue-specific processing of Hoxa 11 antisense transcripts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Two N-terminal self-association domains are required for the dominant negative transcriptional activity of WT1 Denys-Drash mutant proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Pax-2 is required for mesenchyme-to-epithelium conversion during kidney development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Alternative splicing and genomic structure of the Wilms tumor gene WT1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3180702

Expression of a new RNA-splice isoform of WT1 in developing kidney-gonadal complexes of the turtle, Trachemys scripta

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Eel WT1 sequence and expression in spontaneous nephroblastomas in Japanese eel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Alternatively used promoters and distinct elements direct tissue-specific expression of nephrin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Annotation of mammalian primary microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Antisense WT1 transcription parallels sense mRNA and protein expression in fetal kidney and can elevate protein levels in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

A large quantity of novel human antisense transcripts detected by LongSAGE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Further evidence that imbalance of WT1 isoforms may be involved in Denys – Drash syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-441

Epigenetic lesions at the H19 locus in Wilms' tumour patients

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21888672

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

FGF-8 isoforms activate receptor splice forms that are expressed in mesenchymal regions of mouse development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21888672

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-441

1 reference

release_jqxsvxioqjgzje4fleryfinwna

30 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jqxsvxioqjgzje4fleryfinwna

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3180702

1 reference

30 July 2017

1 reference