(Q34014420)

30 July 2017

An alignment confidence score capturing robustness to guide tree uncertainty (English)

1 reference

30 July 2017

5

1 reference

30 July 2017

Giddy Landan

3

0 references

Eyal Privman

series ordinal

2

object named as

Eyal Privman

1 reference

30 July 2017

1

Osnat Penn

1 reference

30 July 2017

Dan Graur

4

1 reference

30 July 2017

5 March 2010

1 reference

Molecular Biology and Evolution

30 July 2017

1 reference

30 July 2017

27

1 reference

30 July 2017

8

1 reference

30 July 2017

1759-1767

1 reference

Fast statistical alignment

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

INDELible: a flexible simulator of biological sequence evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

LOCAL RELIABILITY MEASURES FROM SETS OF CO-OPTIMAL MULTIPLE SEQUENCE ALIGNMENTS

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

The accuracy of several multiple sequence alignment programs for proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

ROCR: visualizing classifier performance in R

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Joint Bayesian Estimation of Alignment and Phylogeny

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Bayesian coestimation of phylogeny and sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

MAFFT version 5: improvement in accuracy of multiple sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

MUSCLE: multiple sequence alignment with high accuracy and high throughput

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

SOAP, cleaning multiple alignments from unstable blocks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

A comprehensive comparison of multiple sequence alignment programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Rose: generating sequence families.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

The neighbor-joining method: a new method for reconstructing phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

The rapid generation of mutation data matrices from protein sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

Confidence Limits on Phylogenies: an Approach using the Bootstrap

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ066

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ066

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ066

The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908709

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20207713

12 December 2020

inferred from PubMed ID database lookup

Heads or tails: a simple reliability check for multiple sequence alignments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20207713

12 December 2020

inferred from PubMed ID database lookup

Characterization of pairwise and multiple sequence alignment errors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20207713

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/MOLBEV/MSQ066

1 reference

release_l5va665t4fdxrgznfbsilarfke

30 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l5va665t4fdxrgznfbsilarfke

24 November 2022

mapped directly with Wikidata item

PMCID

2908709

1 reference

30 July 2017

1 reference

PubMed ID

20207713