(Q34017022)

30 July 2017

title

On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys (English)

1 reference

30 July 2017

1 reference

3

Nigel Goldenfeld

1 reference

30 July 2017

Patricio Jeraldo

1

1 reference

30 July 2017

Nicholas Chia

series ordinal

2

1 reference

30 July 2017

language of work or name

1 reference

13 September 2011

1 reference

Environmental Microbiology

30 July 2017

published in

1 reference

30 July 2017

volume

13

1 reference

30 July 2017

issue

11

1 reference

30 July 2017

page(s)

3000-3009

1 reference

Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys

30 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Bacterial community variation in human body habitats across space and time

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Community genomics among stratified microbial assemblages in the ocean's interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Novelty and uniqueness patterns of rare members of the soil biosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Detection of lateral gene transfer events in the prokaryotic tRNA synthetases by the ratios of evolutionary distances method

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Microbial community gene expression in ocean surface waters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Bacterial communities of disease vectors sampled across time, space, and species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Short pyrosequencing reads suffice for accurate microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

How many bootstrap replicates are necessary?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

An obesity-associated gut microbiome with increased capacity for energy harvest

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

A core gut microbiome in obese and lean twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02577.X

10.1111/J.1462-2920.2011.02577.X

21 January 2018

Identifiers

DOI

1 reference

30 July 2017

1 reference