(Q34022518)

30 July 2017

1 reference

title

The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes (English)

1 reference

30 July 2017

0 references

1 reference

4

N Luisa Hiller

1 reference

30 July 2017

Garth D Ehrlich

1

0 references

Paul Stoodley

object named as

Paul Stoodley

6

0 references

author name string

Azad Ahmed

2

1 reference

30 July 2017

Josh Earl

3

1 reference

30 July 2017

J William Costerton

5

1 reference

30 July 2017

J Christopher Post

7

1 reference

30 July 2017

Patrick DeMeo

8

1 reference

30 July 2017

Fen Ze Hu

9

1 reference

30 July 2017

28 May 2010

1 reference

FEMS Immunology and Medical Microbiology

30 July 2017

1 reference

30 July 2017

59

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30 July 2017

269-279

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30 July 2017

3

1 reference

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Gene recombination in Escherichia coli

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

5 July 2018

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

The Significance of Pneumococcal Types

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Evolution of MRSA during hospital transmission and intercontinental spread

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

STUDIES ON THE CHEMICAL NATURE OF THE SUBSTANCE INDUCING TRANSFORMATION OF PNEUMOCOCCAL TYPES: INDUCTION OF TRANSFORMATION BY A DESOXYRIBONUCLEIC ACID FRACTION ISOLATED FROM PNEUMOCOCCUS TYPE III

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Chronic surgical site infection due to suture-associated polymicrobial biofilm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Cell death in Streptococcus mutans biofilms: a link between CSP and extracellular DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Ultrastructural examination of failed molar retreatment with secondary apical periodontitis: an examination of endodontic biofilms in an endodontic retreatment failure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Tracing the evolution of competence in Haemophilus influenzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Modulation of eDNA release and degradation affects Staphylococcus aureus biofilm maturation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

A fratricidal mechanism is responsible for eDNA release and contributes to biofilm development of Enterococcus faecalis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

High genetic diversity of nontypeable Haemophilus influenzae isolates from two children attending a day care center

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Characterization of biofilm matrix, degradation by DNase treatment and evidence of capsule downregulation in Streptococcus pneumoniae clinical isolates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Fluorescence "in situ" hybridization for the detection of biofilm in the middle ear and upper respiratory tract mucosa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Direct demonstration of viable Staphylococcus aureus biofilms in an infected total joint arthroplasty. A case report

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

What makes pathogens pathogenic

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Prevalence of biofilm-forming bacteria in chronic rhinosinusitis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Population-level virulence factors amongst pathogenic bacteria: relation to infection outcome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Bacterial biofilms in otitis media: evidence and relevance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Sequence and functional analyses of Haemophilus spp. genomic islands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Pharyngeal colonization dynamics of Haemophilus influenzae and Haemophilus haemolyticus in healthy adult carriers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Confocal scanning laser microscopy evidence of biofilms in patients with chronic rhinosinusitis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Virulence phenotypes of low-passage clinical isolates of nontypeable Haemophilus influenzae assessed using the chinchilla laniger model of otitis media

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Competence-induced fratricide in streptococci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Biofilms formed by nontypeable Haemophilus influenzae in vivo contain both double-stranded DNA and type IV pilin protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Cannibalism and fratricide: mechanisms and raisons d'être

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patients

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Novel type IV secretion system involved in propagation of genomic islands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Targeted killing of Streptococcus mutans by a pheromone-guided "smart" antimicrobial peptide

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Bacterial biofilms in chronic rhinosinusitis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Evolution of competence and DNA uptake specificity in the Pasteurellaceae.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Extensive genomic plasticity in Pseudomonas aeruginosa revealed by identification and distribution studies of novel genes among clinical isolates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Studying plasmid horizontal transfer in situ: a critical review

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Genome evolution in bacteria: order beneath chaos.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Bacterial plurality as a general mechanism driving persistence in chronic infections

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Role of bacteria in chronic prostatitis/chronic pelvic pain syndrome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Identification, distribution, and expression of novel genes in 10 clinical isolates of nontypeable Haemophilus influenzae.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Identification of new hmwA alleles from nontypeable Haemophilus influenzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Genetic analysis of diverse disease-causing pneumococci indicates high levels of diversity within serotypes and capsule switching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Self-generated diversity produces "insurance effects" in biofilm communities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Prevalence of the hifBC, hmw1A, hmw2A, hmwC, and hia Genes in Haemophilus influenzae Isolates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Nonfiltrability of the agents of genetic recombination in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Genetic exchange in Salmonella

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Pilot study of the genetic diversity of the pneumococcal nasopharyngeal flora among children attending day care centers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Extracellular DNA Required for Bacterial Biofilm Formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Nonencapsulated Haemophilus influenzae in Aboriginal infants with otitis media: prolonged carriage of P2 porin variants and evidence for horizontal P2 gene transfer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Carriage of multiple ribotypes of non-encapsulated Haemophilus influenzae in aboriginal infants with otitis media

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Bacterial biofilms: influence on the pathogenesis, diagnosis and treatment of urinary tract infections.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Long PCR-ribotyping of nontypeable Haemophilus influenzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Defined Nongrowth Media for Stage II Development of Competence in Haemophilus influenzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Streptococcus pneumoniae forms surface-attached communities in the middle ear of experimentally infected chinchillas

5 July 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

The diabetic foot: the importance of biofilms and wound bed preparation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

The influence of fluid shear on the structure and material properties of sulphate-reducing bacterial biofilms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Mucosal biofilm formation on middle-ear mucosa in the chinchilla model of otitis media

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Direct detection of bacterial biofilms on the middle-ear mucosa of children with chronic otitis media

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

New insights into the pneumococcal fratricide: relationship to clumping and identification of a novel immunity factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Adaptive evolution in single species bacterial biofilms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Cell density- and ComE-dependent expression of a group of mutacin and mutacin-like genes in Streptococcus mutans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Oxygen metabolism, oxidative stress and acid-base physiology of dental plaque biofilms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

The breadth of bacterial diversity in the human periodontal pocket and other oral sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

The role of biofilms in otolaryngologic infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Acquisition of new capsular genes among clinical isolates of antibiotic-resistant Streptococcus pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Evidence of bacterial metabolic activity in culture-negative otitis media with effusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Identification, prevalence and population structure of non-typable Streptococcus pneumoniae in carriage samples isolated from preschoolers attending day-care centres.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Bacterial biofilms on the sinus mucosa of human subjects with chronic rhinosinusitis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Viscoelastic properties of a mixed culture biofilm from rheometer creep analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Genetic exchange between Treponema denticola and Streptococcus gordonii in biofilms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Identification of adenoid biofilms in chronic rhinosinusitis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Molecular and imaging techniques for bacterial biofilms in joint arthroplasty infections.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Population biology of Streptococcus pneumoniae isolated from oropharyngeal carriage and invasive disease.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910629

Diversity and sharing of Haemophilus influenzae strains colonizing healthy children attending day-care centers

29 October 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Evolution of species interactions in a biofilm community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-695X.2010.00704.X

Mucosal biofilm formation on middle-ear mucosa in a nonhuman primate model of chronic suppurative otitis media

21 January 2018

1 reference

12 December 2020

Evidence for microbial biofilms in cholesteatomas

1 reference

12 December 2020

Anatomical evidence of microbial biofilms in tonsillar tissues: a possible mechanism to explain chronicity

1 reference

12 December 2020

Simultaneous Respiratory Tract Colonization by Multiple Strains of NontypeableHaemophilus influenzaein Chronic Obstructive Pulmonary Disease: Implications for Antibiotic Therapy

1 reference

12 December 2020

An adherent Gardnerella vaginalis biofilm persists on the vaginal epithelium after standard therapy with oral metronidazole

1 reference

12 December 2020

Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae

1 reference

12 December 2020

Bacterial otitis media, the chinchilla middle ear, and biofilms

1 reference

12 December 2020

Biofilms and chronic infections

1 reference

12 December 2020

Clinical trials of recombinant human DNase in cystic fibrosis patients

1 reference

12 December 2020

10.1111/J.1574-695X.2010.00704.X

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference