(Q34023095)

30 July 2017

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title

Annotating non-coding regions of the genome (English)

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30 July 2017

Roger P Alexander

1

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Joel Rozowsky

object named as

Joel Rozowsky

series ordinal

3

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Mark Bender Gerstein

series ordinal

5

object named as

Mark B Gerstein

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30 July 2017

4

Michael Snyder

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30 July 2017

Gang Fang

2

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30 July 2017

13 July 2010

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30 July 2017

Nature Reviews Genetics

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30 July 2017

11

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30 July 2017

559-571

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30 July 2017

8

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https://scigraph.springernature.com/pub.10.1038/nrg2814

30 July 2017

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cites work

Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms

1 reference

Proposal to sequence the human genome stirs debate

31 March 2020

1 reference

The proper study of mankind

31 March 2020

1 reference

Genetic diagnosis by whole exome capture and massively parallel DNA sequencing

31 March 2020

1 reference

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

31 March 2020

1 reference

Targeted capture and massively parallel sequencing of 12 human exomes

31 March 2020

1 reference

Initial sequencing and analysis of the human genome

31 March 2020

1 reference

The Sequence of the Human Genome

31 March 2020

1 reference

Small silencing RNAs: an expanding universe

31 March 2020

1 reference

Ultraconserved Elements in the Human Genome

31 March 2020

1 reference

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

31 March 2020

1 reference

In vivo enhancer analysis of human conserved non-coding sequences

31 March 2020

1 reference

Long-range control of gene expression: emerging mechanisms and disruption in disease

31 March 2020

1 reference

Comprehensive resequence analysis of a 136 kb region of human chromosome 8q24 associated with prostate and colon cancers

31 March 2020

1 reference

Genomic views of distant-acting enhancers

31 March 2020

1 reference

Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits

31 March 2020

1 reference

Mapping and sequencing of structural variation from eight human genomes

31 March 2020

1 reference

Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes

31 March 2020

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

31 March 2020

1 reference

Unlocking the secrets of the genome

31 March 2020

1 reference

31 March 2020

The language of genes

1 reference

Across the curious parallel of language and species evolution

31 March 2020

1 reference

Human language as a culturally transmitted replicator

31 March 2020

1 reference

Empirical comparison of ab initio repeat finding programs

31 March 2020

1 reference

Structured RNAs in the ENCODE selected regions of the human genome

31 March 2020

1 reference

GENCODE: producing a reference annotation for ENCODE

31 March 2020

1 reference

PseudoPipe: an automated pseudogene identification pipeline.

31 March 2020

1 reference

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

31 March 2020

1 reference

31 March 2020

1 reference

Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes

31 March 2020

1 reference

Genome-wide location and function of DNA binding proteins

31 March 2020

1 reference

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

31 March 2020

1 reference

Chromatin immunoprecipitation and microarray-based analysis of protein location

31 March 2020

1 reference

Genome-wide mapping of in vivo protein-DNA interactions

31 March 2020

1 reference

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

31 March 2020

1 reference

ChIP-seq: advantages and challenges of a maturing technology

31 March 2020

1 reference

Global identification of human transcribed sequences with genome tiling arrays

31 March 2020

1 reference

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

31 March 2020

1 reference

Mapping and quantifying mammalian transcriptomes by RNA-Seq

31 March 2020

1 reference

The transcriptional landscape of the yeast genome defined by RNA sequencing

31 March 2020

1 reference

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

31 March 2020

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

31 March 2020

1 reference

The UCSC Genome Browser Database

31 March 2020

1 reference

Human DNA methylomes at base resolution show widespread epigenomic differences

31 March 2020

1 reference

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

31 March 2020

1 reference

High-resolution profiling of histone methylations in the human genome

31 March 2020

1 reference

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

31 March 2020

1 reference

Assessing the need for sequence-based normalization in tiling microarray experiments

31 March 2020

1 reference

Mapping short DNA sequencing reads and calling variants using mapping quality scores

31 March 2020

1 reference

SOAP: short oligonucleotide alignment program

31 March 2020

1 reference

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

31 March 2020

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

31 March 2020

1 reference

Modeling ChIP sequencing in silico with applications

31 March 2020

1 reference

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

31 March 2020

1 reference

Mapping accessible chromatin regions using Sono-Seq

31 March 2020

1 reference

Large-scale transcriptional activity in chromosomes 21 and 22

31 March 2020

1 reference

The transcriptional activity of human Chromosome 22

31 March 2020

1 reference

RNA maps reveal new RNA classes and a possible function for pervasive transcription

31 March 2020

1 reference

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

31 March 2020

1 reference

Transcriptional noise and the fidelity of initiation by RNA polymerase II.

31 March 2020

1 reference

Most "dark matter" transcripts are associated with known genes

31 March 2020

1 reference

Insights from genomic profiling of transcription factors

31 March 2020

1 reference

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

31 March 2020

1 reference

Copy number variants (CNVs) in primate species using array-based comparative genomic hybridization.

31 March 2020

1 reference

Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo

31 March 2020

1 reference

High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes

31 March 2020

1 reference

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

31 March 2020

1 reference

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci

31 March 2020

1 reference

Primate segmental duplications: crucibles of evolution, diversity and disease

31 March 2020

1 reference

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

31 March 2020

1 reference

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

31 March 2020

1 reference

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

31 March 2020

1 reference

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

31 March 2020

1 reference

Genomics: protein fossils live on as RNA.

31 March 2020

1 reference

Deletion of ultraconserved elements yields viable mice

31 March 2020

1 reference

Genetics. Genomic clues to DNA treasure sometimes lead nowhere

31 March 2020

1 reference

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

31 March 2020

1 reference

Mutation rate variation in multicellular eukaryotes: causes and consequences

31 March 2020

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

31 March 2020

1 reference

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

31 March 2020

1 reference

Continuous base identification for single-molecule nanopore DNA sequencing

31 March 2020

1 reference

Real-time DNA sequencing from single polymerase molecules

31 March 2020

1 reference

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge

31 March 2020

1 reference

Direct multiplexed measurement of gene expression with color-coded probe pairs

31 March 2020

1 reference

Capturing chromosome conformation

31 March 2020

1 reference

Circos: an information aesthetic for comparative genomics

31 March 2020

1 reference

An oestrogen-receptor-α-bound human chromatin interactome

31 March 2020

1 reference

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

31 March 2020

1 reference

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

31 March 2020

1 reference

A three-dimensional model of the yeast genome

31 March 2020

1 reference

Distinguishing protein-coding and noncoding genes in the human genome

31 March 2020

1 reference

Evolution at two levels in humans and chimpanzees

31 March 2020

1 reference

Synergy between sequence and size in Large-scale genomics

31 March 2020

1 reference

Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae

31 March 2020

1 reference

The embryonic cell lineage of the nematode Caenorhabditis elegans

31 March 2020

1 reference

Human cell type diversity, evolution, development, and classification with special reference to cells derived from the neural crest

31 March 2020

1 reference

The evolution of cell types in animals: emerging principles from molecular studies

31 March 2020

1 reference

Slippage synthesis of simple sequence DNA

31 March 2020

1 reference

Neocentromeres: role in human disease, evolution, and centromere study

31 March 2020

1 reference

Unstable tandem repeats in promoters confer transcriptional evolvability

31 March 2020

1 reference

Which transposable elements are active in the human genome?

31 March 2020

1 reference

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

31 March 2020

1 reference

Identification of novel genes coding for small expressed RNAs

31 March 2020

1 reference

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

31 March 2020

1 reference

An extensive class of small RNAs in Caenorhabditis elegans

31 March 2020

1 reference

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

31 March 2020

1 reference

MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline

31 March 2020

1 reference

A census of human transcription factors: function, expression and evolution

31 March 2020

1 reference

Transcriptional Regulatory Elements in the Human Genome

31 March 2020

1 reference

Closing gaps in the human genome with fosmid resources generated from multiple individuals

31 March 2020

1 reference

DNA sequencing. A plan to capture human diversity in 1000 genomes

31 March 2020

1 reference

The diploid genome sequence of an individual human

31 March 2020

1 reference

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

31 March 2020

1 reference

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

31 March 2020

1 reference

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

31 March 2020

1 reference

Characterization of missing human genome sequences and copy-number polymorphic insertions

31 March 2020

1 reference

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

31 March 2020

1 reference

Building the sequence map of the human pan-genome

31 March 2020

1 reference

miRBase: tools for microRNA genomics

31 March 2020

1 reference

Detection of large-scale variation in the human genome

31 March 2020

1 reference

So much "junk" DNA in our genome

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20628352

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG2814

1 reference

PubMed ID

20628352

Dimensions Publication ID

30 July 2017

0 references

1 reference

PubMed ID

20628352