(Q34028818)

30 July 2017

title

Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy (English)

1 reference

30 July 2017

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Anastasia Zhuravleva

2

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author name string

Qinghua Wang

series ordinal

1

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30 July 2017

Lila M Gierasch

series ordinal

3

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30 July 2017

language of work or name

English

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publication date

5 October 2011

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30 July 2017

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30 July 2017

volume

50

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30 July 2017

issue

43

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30 July 2017

page(s)

9225-9236

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Macromolecular crowding fails to fold a globular protein in cells

30 July 2017

cites work

1 reference

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Protein interactions in the Escherichia coli cytosol: an impediment to in-cell NMR spectroscopy.

5 July 2018

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Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

5 July 2018

1 reference

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Ultra-weak reversible protein-protein interactions

5 July 2018

1 reference

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In-cell protein NMR and protein leakage

5 July 2018

1 reference

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Protein folding in the cell: challenges and progress

5 July 2018

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NMR studies on domain diffusion and alignment in modular GB1 repeats

5 July 2018

1 reference

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Macromolecule diffusion and confinement in prokaryotic cells

5 July 2018

1 reference

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Volume exclusion and soft interaction effects on protein stability under crowded conditions

5 July 2018

1 reference

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Size dependence of protein diffusion in the cytoplasm of Escherichia coli

5 July 2018

1 reference

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Effects of proteins on protein diffusion.

5 July 2018

1 reference

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Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

5 July 2018

1 reference

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Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

5 July 2018

1 reference

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Mobility of cytoplasmic, membrane, and DNA-binding proteins in Escherichia coli

5 July 2018

1 reference

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Protein (19)F NMR in Escherichia coli

5 July 2018

1 reference

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Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin

5 July 2018

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The role of dynamic conformational ensembles in biomolecular recognition

5 July 2018

1 reference

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Ubiquitin-binding domains - from structures to functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

The role of biomacromolecular crowding, ionic strength, and physicochemical gradients in the complexities of life's emergence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Protein structure determination in living cells by in-cell NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Using NMR to distinguish viscosity effects from nonspecific protein binding under crowded conditions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: implications for in-cell NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Looking into live cells with in-cell NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Salting the charged surface: pH and salt dependence of protein G B1 stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

A simple physical model for scaling in protein-protein interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Weak protein-protein interactions as probed by NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Structure and Ubiquitin Binding of the Ubiquitin-interacting Motif

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Solute and macromolecule diffusion in cellular aqueous compartments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Evaluation of parameters critical to observing proteins inside living Escherichia coli by in-cell NMR spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Macromolecular crowding: an important but neglected aspect of the intracellular environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Protein mobility in the cytoplasm of Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Design of an expression system for detecting folded protein domains and mapping macromolecular interactions by NMR

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Inhibition of the 26 S proteasome by polyubiquitin chains synthesized to have defined lengths

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Effect of deuteration on the amide proton relaxation rates in proteins. Heteronuclear NMR experiments on villin 14T

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Molecular evolution, intracellular organization, and the quinary structure of proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Factors affecting the viscosity in high concentration solutions of different monoclonal antibodies.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Reverse micelle encapsulation as a model for intracellular crowding

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

High-resolution multi-dimensional NMR spectroscopy of proteins in human cells.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Investigating macromolecules inside cultured and injected cells by in-cell NMR spectroscopy.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

A captured folding intermediate involved in dimerization and domain-swapping of GB1.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

NMR Spectroscopy Reveals Cytochromec–Poly(ethylene glycol) Interactions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3202675

Internal and global protein motion assessed with a fusion construct and in-cell NMR spectroscopy

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein Crowding Tunes Protein Stability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Translational and rotational motions of proteins in a protein crowded environment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/BI201287E

1 reference

30 July 2017

1 reference

30 July 2017

1 reference