(Q34032597)

30 July 2017

A hybrid approach for the automated finishing of bacterial genomes (English)

1 reference

30 July 2017

0 references

11

Robert Sebra

1 reference

30 July 2017

26

Andrew Kasarskis

1 reference

30 July 2017

29

Eric E Schadt

1 reference

30 July 2017

28

Matthew K Waldor

1 reference

30 July 2017

Ali Bashir

1

1 reference

30 July 2017

Aaron Klammer

2

1 reference

30 July 2017

William P Robins

3

1 reference

30 July 2017

Chen-Shan Chin

4

1 reference

30 July 2017

Dale Webster

5

1 reference

30 July 2017

Ellen Paxinos

6

1 reference

30 July 2017

David Hsu

7

1 reference

30 July 2017

Meredith Ashby

8

1 reference

30 July 2017

Susana Wang

9

1 reference

30 July 2017

Paul Peluso

10

1 reference

30 July 2017

Jon Sorenson

12

1 reference

30 July 2017

James Bullard

13

1 reference

30 July 2017

Jackie Yen

14

1 reference

30 July 2017

Marie Valdovino

15

1 reference

30 July 2017

Emilia Mollova

16

1 reference

30 July 2017

Khai Luong

17

1 reference

30 July 2017

Steven Lin

18

1 reference

30 July 2017

Brianna LaMay

19

1 reference

30 July 2017

Amruta Joshi

20

1 reference

30 July 2017

Lori Rowe

21

1 reference

30 July 2017

Michael Frace

22

1 reference

30 July 2017

Cheryl L Tarr

23

1 reference

30 July 2017

Maryann Turnsek

24

1 reference

30 July 2017

Brigid M Davis

25

1 reference

30 July 2017

John J Mekalanos

27

1 reference

30 July 2017

1 July 2012

1 reference

30 July 2017

1 reference

30 July 2017

30

1 reference

30 July 2017

701-707

1 reference

30 July 2017

7

1 reference

https://scigraph.springernature.com/pub.10.1038/nbt.2288

30 July 2017

0 references

cites work

Nepalese origin of cholera epidemic in Haiti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Evidence for several waves of global transmission in the seventh cholera pandemic

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Recent clonal origin of cholera in Haiti

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Genome structural variation discovery and genotyping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

The origin of the Haitian cholera outbreak strain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Limitations of next-generation genome sequence assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

A window into third-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Assembly of large genomes using second-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

A catalog of reference genomes from the human microbiome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Assembly complexity of prokaryotic genomes using short reads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

De novo assembly of human genomes with massively parallel short read sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Parental origin of sequence variants associated with complex diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Sequencing technologies - the next generation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Genomics. Genome project standards in a new era of sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Maximum likelihood genome assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Genome assembly reborn: recent computational challenges

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

ABySS: a parallel assembler for short read sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Next-generation DNA sequencing methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

ALLPATHS: de novo assembly of whole-genome shotgun microreads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Short read fragment assembly of bacterial genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Integrons: agents of bacterial evolution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

The fragment assembly string graph

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Versatile and open software for comparing large genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Hierarchical scaffolding with Bambus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

ARACHNE: a whole-genome shotgun assembler

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

An Eulerian path approach to DNA fragment assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

CTXphi contains a hybrid genome derived from tandemly integrated elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

A whole-genome assembly of Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Replication and integration of a Vibrio cholerae cryptic plasmid linked to the CTX prophage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

A distinctive class of integron in the Vibrio cholerae genome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731737

Fragment assembly with short reads

5 July 2018

1 reference

High-throughput gene mapping in Caenorhabditis elegans

21 January 2018

1 reference

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

21 January 2018

1 reference

Aggressive assembly of pyrosequencing reads with mates

21 January 2018

1 reference

A note on two problems in connexion with graphs

21 January 2018

1 reference

Structural variation analysis with strobe reads

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22750883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.2288

1 reference

30 July 2017

1 reference

30 July 2017

1 reference