(Q34039465)

English

A comparison of methods for classifying clinical samples based on proteomics data: a case study for statistical and machine learning approaches.

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

A comparison of methods for classifying clinical samples based on proteomics data: a case study for statistical and machine learning approaches (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

machine learning

0 references

0 references

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Cameron P Hurst

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

author name string

Dayle L Sampson

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Tony J Parker

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

language of work or name

0 references

publication date

28 September 2011

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

e24973

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

copyright license

Creative Commons Attribution 4.0 International

28 September 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3182169

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Proteomic diagnosis competition: design, concepts, participants and first results

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Discriminating variable test and selectivity ratio plot: quantitative tools for interpretation and variable (biomarker) selection in complex spectral or chromatographic profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Sparse canonical methods for biological data integration: application to a cross-platform study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Breast cancer diagnosis from proteomic mass spectrometry data: a comparative evaluation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Large-scale proteomics and phosphoproteomics of urinary exosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Conditional variable importance for random forests

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

A classification model for the Leiden proteomics competition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Application of the random forest classification method to peaks detected from mass spectrometric proteomic profiles of cancer patients and controls

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Approaches to dimensionality reduction in proteomic biomarker studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

How to distinguish healthy from diseased? Classification strategy for mass spectrometry-based clinical proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Bias in random forest variable importance measures: illustrations, sources and a solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Combination of SELDI-TOF-MS and data mining provides early-stage response prediction for rectal tumors undergoing multimodal neoadjuvant therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Searching for biomarkers of heart failure in the mass spectra of blood plasma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Dimension reduction for classification with gene expression microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Visualisation of gene expression data - the GE-biplot, the Chip-plot and the Gene-plot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Gene selection and classification of microarray data using random forest.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Use of principal component analysis and the GE-biplot for the graphical exploration of gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Data analysis methods for detection of differential protein expression in two-dimensional gel electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Identification and proteomic profiling of exosomes in human urine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Application of the random forest classification algorithm to a SELDI-TOF proteomics study in the setting of a cancer prevention trial

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Graphical exploration of gene expression data: a comparative study of three multivariate methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Discriminant models for high-throughput proteomics mass spectrometer data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: curses, caveats, cautions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

5 July 2018

The origins of bioinformatics

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

Cancer informatics by prototype networks in mass spectrometry.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

A tutorial on support vector machine-based methods for classification problems in chemometrics

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

Partial least-squares regression: a tutorial

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

Bagging predictors

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

A Tutorial on Support Vector Machines for Pattern Recognition

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0024973

21 January 2018

Machine learning study for the prediction of transdermal peptide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

29 October 2018

Organizing a competition on clinical mass spectrometry based proteomic diagnosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3182169

29 October 2018

Principal component discriminant analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21969867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

10.1371/JOURNAL.PONE.0024973

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

2011PLoSO...624973S

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21969867%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34039465&oldid=1972058971"