(Q34044381)

30 July 2017

title

Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion (English)

1 reference

30 July 2017

Mariusz Nowacki

6

0 references

Linda Sperling

object named as

Linda Sperling

series ordinal

5

0 references

Estienne C. Swart

series ordinal

1

object named as

Estienne C Swart

1 reference

30 July 2017

3

Pamela Y Sandoval

1 reference

30 July 2017

Cyril Denby Wilkes

2

1 reference

30 July 2017

Miroslav Arambasic

series ordinal

4

1 reference

30 July 2017

language of work or name

English

0 references

publication date

12 July 2014

1 reference

30 July 2017

published in

Nucleic Acids Research

1 reference

30 July 2017

volume

42

1 reference

30 July 2017

issue

14

1 reference

30 July 2017

page(s)

8970-8983

1 reference

Creative Commons Attribution 3.0 Unported

30 July 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement

5 July 2018

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Extraordinary genome stability in the ciliate Paramecium tetraurelia

5 July 2018

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The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences

5 July 2018

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Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus

5 July 2018

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5 July 2018

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Site-specific DICER and DROSHA RNA products control the DNA-damage response

5 July 2018

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RNA-guided DNA rearrangements in ciliates: is the best genome defence a good offence?

5 July 2018

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Transgenerational epigenetic instability is a source of novel methylation variants

5 July 2018

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Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling

5 July 2018

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A small-RNA perspective on gametogenesis, fertilization, and early zygotic development.

5 July 2018

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ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia

5 July 2018

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A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila

5 July 2018

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The Tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Distinct RNA-dependent RNA polymerases are required for RNAi triggered by double-stranded RNA versus truncated transgenes in Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Epigenetic inheritance in ciliates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

5 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

5 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

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Small RNAs in transcriptional gene silencing and genome defence

5 July 2018

1 reference

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Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia.

5 July 2018

1 reference

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Origins and evolution of eukaryotic RNA interference

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

A unified classification system for eukaryotic transposable elements

5 July 2018

1 reference

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Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

EPIGENETIC CONTROL SYSTEMS

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Sex, Sex Inheritance and Sex Determination in Paramecium Aurelia

5 July 2018

1 reference

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Mating Type Determination in Paramecium Aurelia, a Model of Nucleo-Cytoplasmic Interaction

5 July 2018

1 reference

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Sonneborn and the cytoplasm

5 July 2018

1 reference

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Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila

5 July 2018

1 reference

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Nowa1p and Nowa2p: novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

The (dual) origin of epigenetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Communication between parental and developing genomes during tetrahymena nuclear differentiation is likely mediated by homologous RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Small RNAs in genome rearrangement in Tetrahymena.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

WebLogo: A Sequence Logo Generator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Processing of double-strand breaks is involved in the precise excision of paramecium internal eliminated sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Non-Mendelian inheritance and homology-dependent effects in ciliates.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Transgene-mediated post-transcriptional gene silencing is inhibited by 3' non-coding sequences in Paramecium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Homology-dependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Homology-dependent gene silencing in Paramecium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

A mutation in Paramecium tetraurelia reveals functional and structural features of developmentally excised DNA elements.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Developmental genome reorganization in ciliated protozoa: the transposon link

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Excision of the piggyBac transposable element in vitro is a precise event that is enhanced by the expression of its encoded transposase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Non-Mendelian inheritance of macronuclear mutations is gene specific in Paramecium tetraurelia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Consensus inverted terminal repeat sequence of Paramecium IESs: resemblance to termini of Tc1-related and Euplotes Tec transposons.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Mendelian and Non-Mendelian Mutations Affecting Surface Antigen Expression in Paramecium tetraurelia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

A conserved nucleotide sequence at the sites of developmentally regulated chromosomal breakage in Tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Induced change in a non-mendelian determinant by transplantation of macronucleoplasm in Paramecium tetraurelia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Microinjection of plasmid DNA encoding the A surface antigen of Paramecium tetraurelia restores the ability to regenerate a wild-type macronucleus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Permanent rescue of a non-Mendelian mutation of Paramecium by microinjection of specific DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132734

Genome-defence small RNAs exapted for epigenetic mating-type inheritance.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

Functional diversification of Dicer-like proteins and small RNAs required for genome sculpting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

A role for small RNAs in DNA double-strand break repair.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

RNA interference by feeding in Paramecium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU619

Genes, genetics, and epigenetics: a correspondence

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25016527

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genetic approaches to somatic cell variation: summary comment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25016527

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU619

1 reference

release_daufy6z32jci3j5ksfwesu7sbi

30 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/daufy6z32jci3j5ksfwesu7sbi

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4132734

1 reference

30 July 2017

1 reference