(Q34051600)

30 July 2017

title

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes (English)

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30 July 2017

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30 July 2017

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30 July 2017

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Guillaume Bourque

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30 July 2017

publication date

20 October 2011

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BMC Developmental Biology

30 July 2017

published in

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30 July 2017

volume

11

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30 July 2017

page(s)

63

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Fishing for function: zebrafish BAC transgenics for functional genomics

30 July 2017

cites work

1 reference

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Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events

5 July 2018

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ChIP-Seq identification of weakly conserved heart enhancers

5 July 2018

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A systematic approach to identify functional motifs within vertebrate developmental enhancers.

5 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

5 July 2018

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ChIP-seq accurately predicts tissue-specific activity of enhancers

5 July 2018

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Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish

5 July 2018

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Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

5 July 2018

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Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus

5 July 2018

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Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b

5 July 2018

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Hierarchical regulation of odorant receptor gene choice and subsequent axonal projection of olfactory sensory neurons in zebrafish.

5 July 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

5 July 2018

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In vivo enhancer analysis of human conserved non-coding sequences

5 July 2018

1 reference

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A distal enhancer and an ultraconserved exon are derived from a novel retroposon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

5 July 2018

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Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphé neurones and cranial motoneurones

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Highly conserved non-coding sequences are associated with vertebrate development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Multiple, distant Gata2 enhancers specify temporally and tissue-specific patterning in the developing urogenital system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Sequence and embryonic expression of three zebrafish fringe genes: lunatic fringe, radical fringe, and manic fringe

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Ultraconserved Elements in the Human Genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Characterization of evolutionary rates and constraints in three Mammalian genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Fgf and Bmp signals repress the expression of Bapx1 in the mandibular mesenchyme and control the position of the developing jaw joint

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

A gene expression atlas of the central nervous system based on bacterial artificial chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

A general approach for identifying distant regulatory elements applied to the Gdf6 gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Transcription regulation and animal diversity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

A genomic regulatory network for development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

The role of Bapx1 (Nkx3.2) in the development and evolution of the axial skeleton

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Mesendoderm. an ancient germ layer?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

The murine Bapx1 homeobox gene plays a critical role in embryonic development of the axial skeleton and spleen

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Modification of bacterial artificial chromosomes through chi-stimulated homologous recombination and its application in zebrafish transgenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

TRANSFAC: a database on transcription factors and their DNA binding sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Stages of embryonic development of the zebrafish

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

The formation and maintenance of the definitive endoderm lineage in the mouse: involvement of HNF3/forkhead proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Postimplantation expression patterns indicate a role for the mouse forkhead/HNF-3 alpha, beta and gamma genes in determination of the definitive endoderm, chordamesoderm and neuroectoderm.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Complementary patterns of even-skipped and fushi tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Long-range upstream and downstream enhancers control distinct subsets of the complex spatiotemporal Sox9 expression pattern

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Cracking the genome's second code: enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Function of Pax1 and Pax9 in the sclerotome of medaka fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

The developing lamprey ear closely resembles the zebrafish otic vesicle: otx1 expression can account for all major patterning differences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Differentiation of cerebellar cell identities in absence of Fgf signalling in zebrafish Otx morphants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Modified bacterial artificial chromosomes for zebrafish transgenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

Evidence for control of splicing by alternative RNA secondary structures in Dipteran homothorax pre-mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-213X-11-63

The role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

Going the distance: a current view of enhancer action

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3210094

A 200 base pair region at the 5' end of the chicken adult beta-globin gene is accessible to nuclease digestion

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22011226

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conservation of RET regulatory function from human to zebrafish without sequence similarity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22011226

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-213X-11-63

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference