(Q34055996)

English

Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation (English)

1 reference

Europe PubMed Central

30 July 2017

retrotransposon

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author name string

Kristel Kaer

1

1 reference

Europe PubMed Central

30 July 2017

Jelena Branovets

2

1 reference

Europe PubMed Central

30 July 2017

Anni Hallikma

3

1 reference

Europe PubMed Central

30 July 2017

Pilvi Nigumann

4

1 reference

Europe PubMed Central

30 July 2017

Mart Speek

5

1 reference

Europe PubMed Central

30 July 2017

language of work or name

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publication date

13 October 2011

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

6

1 reference

Europe PubMed Central

30 July 2017

e26099

1 reference

Europe PubMed Central

30 July 2017

10

1 reference

Europe PubMed Central

30 July 2017

copyright license

Creative Commons Attribution 4.0 International

13 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Distributions of transposable elements reveal hazardous zones in mammalian introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Epigenetic control of retrotransposon expression in human embryonic stem cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Many LINE1 elements contribute to the transcriptome of human somatic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Long noncoding RNAs: functional surprises from the RNA world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

An overview of nested genes in eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Unlocking the secrets of the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Direct detection of abortive RNA transcripts in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

The regulated retrotransposon transcriptome of mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Intronic Alus influence alternative splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Nested genes and increasing organizational complexity of metazoan genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Alternative splicing and expression of human and mouse NFAT genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Alternative splicing of Alu exons--two arms are better than one

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference: an unexpected layer of complexity in gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

A model for initiation of mosaic HOX gene expression patterns by non-coding RNAs in early embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Antisense transcription controls cell fate in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

L1 antisense promoter drives tissue-specific transcription of human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Effects of L1 retrotransposon insertion on transcript processing, localization and accumulation: lessons from the retinal degeneration 7 mouse and implications for the genomic ecology of L1 elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

LINE-1 RNA splicing and influences on mammalian gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional activation by bidirectional RNA polymerase II elongation over a silent promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Nested genes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference--a crash course

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Nested genes: biological implications and use of AFM for analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Physical and functional interaction between Elongator and the chromatin-associated Kti12 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Complex patterns of transcription at the insertion site of a retrotransposon in the mouse.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference between convergent promoters caused by elongation over the promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

An abundance of bidirectional promoters in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

RNA truncation by premature polyadenylation attenuates human mobile element activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Isolation and characterization of a novel human thioredoxin-like gene hTLP19 encoding a secretory protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional regulation of the human LINE-1 retrotransposon L1.2B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

An important role for RUNX3 in human L1 transcription and retrotransposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Hot L1s account for the bulk of retrotransposition in the human population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Molecular structure of a novel cholesterol-responsive A subclass ABC transporter, ABCA9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Action at a distance in CI repressor regulation of the bacteriophage 186 genetic switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional collision between convergent genes in budding yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

The human genome browser at UCSC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference by independently regulated genes occurs in any relative arrangement of the genes and is influenced by chromosomal integration position

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Biology of mammalian L1 retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Spidey: a tool for mRNA-to-genomic alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Interspersed repeats and other mementos of transposable elements in mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Members of the SRY family regulate the human LINE retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Improved splice site detection in Genie

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Neural cell adhesion molecule: structure, immunoglobulin-like domains, cell surface modulation, and alternative RNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Identification, characterization, and cell specificity of a human LINE-1 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Identification of an internal cis-element essential for the human Li transcription and a nuclear factor(s) binding to the element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

A rapid alkaline extraction procedure for screening recombinant plasmid DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192792

5 July 2018

Transcriptional interference and termination between duplicated alpha-globin gene constructs suggests a novel mechanism for gene regulation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Many human genes are transcribed from the antisense promoter of L1 retrotransposon.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Isolation of genes from complex sources of mammalian genomic DNA using exon amplification.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

A highly active synthetic mammalian retrotransposon

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026099

21 January 2018

Chromatin, transcript elongation and alternative splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22022525

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elimination of transcriptional interference between tandem genes in plant cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/22022525

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Apolipoprotein(a) gene enhancer resides within a LINE element

1 reference

https://pubmed.ncbi.nlm.nih.gov/22022525

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of polyadenylation signals in human DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/22022525

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0026099

1 reference

Europe PubMed Central

30 July 2017

2011PLoSO...626099K

0 references

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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