(Q34058205)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Temporal coordination of gene networks by Zelda in the early Drosophila embryo (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

0 references

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

author name string

Chung-Yi Nien

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Hsiao-Lan Liang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Stephen Butcher

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Yujia Sun

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Shengbo Fu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Tenzin Gocha

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Nikolai Kirov

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Christine Rushlow

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

publication date

20 October 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

page(s)

e1002339

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

15 January 2020

copyright license

start time

20 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Paused RNA polymerase II as a developmental checkpoint

1 reference

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Identification of functional elements and regulatory circuits by Drosophila modENCODE

5 July 2018

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Genome-wide analysis of mRNA decay patterns during early Drosophila development

5 July 2018

1 reference

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Shadow enhancers foster robustness of Drosophila gastrulation

5 July 2018

1 reference

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Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes

5 July 2018

1 reference

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Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species

5 July 2018

1 reference

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Quantitative imaging of the Dorsal nuclear gradient reveals limitations to threshold-dependent patterning in Drosophila

5 July 2018

1 reference

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Dynamics of the Dorsal morphogen gradient

5 July 2018

1 reference

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The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

5 July 2018

1 reference

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

5 July 2018

1 reference

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Diversity and complexity in DNA recognition by transcription factors

5 July 2018

1 reference

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Design flexibility in cis-regulatory control of gene expression: synthetic and comparative evidence

5 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

5 July 2018

1 reference

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FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution

5 July 2018

1 reference

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The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Precise registration of gene expression boundaries by a repressive morphogen in Drosophila

5 July 2018

1 reference

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fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

5 July 2018

1 reference

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

5 July 2018

1 reference

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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

5 July 2018

1 reference

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RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

5 July 2018

1 reference

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Stability and nuclear dynamics of the bicoid morphogen gradient

5 July 2018

1 reference

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Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts

5 July 2018

1 reference

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Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

5 July 2018

1 reference

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Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The tailless nuclear receptor acts as a dedicated repressor in the early Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Mutations of the Drosophila zinc finger-encoding gene vielfältig impair mitotic cell divisions and cause improper chromosome segregation

5 July 2018

1 reference

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Cloning of the homeotic Sex combs reduced gene in Drosophila and in situ localization of its transcripts

5 July 2018

1 reference

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Genomic regulatory networks and animal development

5 July 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

5 July 2018

1 reference

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Whole-genome analysis of temporal gene expression during foregut development

5 July 2018

1 reference

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Recruitment of the proneural gene scute to the Drosophila sex-determination pathway.

5 July 2018

1 reference

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Structure and function of the feed-forward loop network motif

5 July 2018

1 reference

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DAVID: Database for Annotation, Visualization, and Integrated Discovery

5 July 2018

1 reference

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Slow as molasses is required for polarized membrane growth and germ cell migration in Drosophila.

5 July 2018

1 reference

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slam encodes a developmental regulator of polarized membrane growth during cleavage of the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Network motifs in the transcriptional regulation network of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Polarized insertion of new membrane from a cytoplasmic reservoir during cleavage of the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Dpp signaling thresholds in the dorsal ectoderm of the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Two distinct mechanisms for differential positioning of gene expression borders involving the Drosophila gap protein giant.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Activation of transcription in Drosophila embryos is a gradual process mediated by the nucleocytoplasmic ratio

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Novel 8-base pair sequence (Drosophila DNA replication-related element) and specific binding factor involved in the expression of Drosophila genes for DNA polymerase alpha and proliferating cell nuclear antigen

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Multiple response elements in the Sex-lethal early promoter ensure its female-specific expression pattern

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The graded distribution of the dorsal morphogen is initiated by selective nuclear transport in Drosophila.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The serendipity alpha gene encodes a membrane-associated protein required for the cellularization of the Drosophila embryo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The Drosophila cellularization gene nullo produces a blastoderm-specific transcript whose levels respond to the nucleocytoplasmic ratio

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The dorsal gradient morphogen regulates stripes of rhomboid expression in the presumptive neuroectoderm of the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Rates of synthesis of major classes of RNA in Drosophila embryos

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

Parameters controlling transcriptional activation during early Drosophila development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

REDfly: a Regulatory Element Database for Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

Control of cleavage cycles in Drosophila embryos by frühstart.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

Biological function of unannotated transcription during the early development of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

Supervised detection of conserved motifs in DNA sequences with cosmo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002339

The nullo protein is a component of the actin-myosin network that mediates cellularization in Drosophila melanogaster embryos.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197689

Studies of nuclear and cytoplasmic behaviour during the five mitotic cycles that precede gastrulation in Drosophila embryogenesis

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22028675

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1002339

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028675%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference