(Q34071935)

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Microevolution of cis-regulatory elements: an example from the pair-rule segmentation gene fushi tarazu in the Drosophila melanogaster subgroup

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Europe PubMed Central

PubMed publication ID

30 July 2017

Microevolution of cis-regulatory elements: an example from the pair-rule segmentation gene fushi tarazu in the Drosophila melanogaster subgroup (English)

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Europe PubMed Central

PubMed publication ID

30 July 2017

Drosophila melanogaster

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cis-regulatory element

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based on heuristic

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Mohammed Bakkali

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Mohammed Bakkali

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publication date

3 November 2011

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Europe PubMed Central

PubMed publication ID

30 July 2017

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Europe PubMed Central

PubMed publication ID

30 July 2017

6

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Europe PubMed Central

PubMed publication ID

30 July 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

e27376

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Europe PubMed Central

PubMed publication ID

30 July 2017

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Creative Commons Attribution 4.0 International

3 November 2011

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April 2022 Public Data File from Crossref

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species

1 reference

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5 July 2018

Combinatorial regulation of transcription factors and microRNAs

1 reference

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5 July 2018

Surprising flexibility in a conserved Hox transcription factor over 550 million years of evolution

1 reference

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5 July 2018

Detecting positive selection within genomes: the problem of biased gene conversion

1 reference

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5 July 2018

Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila

1 reference

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5 July 2018

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila

1 reference

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5 July 2018

Conserved noncoding elements and the evolution of animal body plans

1 reference

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5 July 2018

E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements

1 reference

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5 July 2018

Non-genic transcription at the Drosophila bithorax complex functional activity of the dark matter of the genome

1 reference

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5 July 2018

Design flexibility in cis-regulatory control of gene expression: synthetic and comparative evidence

1 reference

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5 July 2018

Positive and negative selection on noncoding DNA in Drosophila simulans

1 reference

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5 July 2018

Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila

1 reference

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5 July 2018

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.

1 reference

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5 July 2018

Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions

1 reference

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5 July 2018

Transient cyclical methylation of promoter DNA.

1 reference

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5 July 2018

The developmental genetics of microevolution.

1 reference

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5 July 2018

Genome dynamics of short oligonucleotides: the example of bacterial DNA uptake enhancing sequences

1 reference

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5 July 2018

The role of a single-stranded nucleotide loop in transcriptional regulation of the human sod2 gene

1 reference

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5 July 2018

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

1 reference

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5 July 2018

The evolutionary significance of cis-regulatory mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogaster

1 reference

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5 July 2018

Functional evolution of a cis-regulatory module

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Adaptive evolution of transcription factor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Phylogenetic footprinting reveals extensive conservation of Sonic Hedgehog (SHH) regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Prospects for inferring very large phylogenies by using the neighbor-joining method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Evolution of larval morphology in flies: get in shape with shavenbaby

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

DnaSP, DNA polymorphism analyses by the coalescent and other methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

A comparison of bayesian methods for haplotype reconstruction from population genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

MATCH: A tool for searching transcription factor binding sites in DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

The evolution of transcriptional regulation in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Chromosomal patterns of microsatellite variability contrast sharply in African and non-African populations of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

A New Statistical Method for Haplotype Reconstruction from Population Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Evidence for stabilizing selection in a eukaryotic enhancer element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Kinetic analysis of segmentation gene interactions in Drosophila embryos.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

A role of Ultrabithorax in morphological differences between Drosophila species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

A binding site for multiple transcriptional activators in the fushi tarazu proximal enhancer is essential for gene expression in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

TRANSFAC database as a bridge between sequence data libraries and biological function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

TRANSFAC: a database on transcription factors and their DNA binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Evolutionary dynamics of the enhancer region of even-skipped in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Statistical tests of neutrality of mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Multiple proteins interact with the fushi tarazu proximal enhancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Pair-rule expression of the Drosophila fushi tarazu gene: a nuclear receptor response element mediates the opposing regulatory effects of runt and hairy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Molecular drive: a cohesive mode of species evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Latitudinal variability of Drosophila melanogaster: allozyme frequencies divergence between European and Afrotropical populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Regulation and function of the Drosophila segmentation gene fushi tarazu

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Transcriptional control of Drosophila fushi tarazu zebra stripe expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Sequence logos: a new way to display consensus sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Transcriptional regulation of the Drosophila segmentation gene fushi tarazu (ftz)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Adaptive protein evolution at the Adh locus in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Synthetic oligonucleotides recreate Drosophila fushi tarazu zebra-stripe expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Monophyly/paraphyly/polyphyly and gene/species trees: an example from Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Interactions between proteins bound to the duck beta A-globin gene promoter and enhancer detected by the DNaseI footprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

On the number of segregating sites in genetical models without recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

5 July 2018

Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Tissue-dependent limited pleiotropy affects gene expression in barley.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

The evolution of genetic networks by non-adaptive processes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Morphological evolution through multiple cis-regulatory mutations at a single gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Adaptive evolution of non-coding DNA in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Expression patterns of the rogue Hox genes Hox3/zen and fushi tarazu in the apterygote insect Thermobia domestica.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Differential cytoplasmic mRNA localisation adjusts pair-rule transcription factor activity to cytoarchitecture in dipteran evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Genetic differentiation between American and European Drosophila melanogaster populations could be attributed to admixture of African alleles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Genetic analysis of bristle loss in hybrids between Drosophila melanogaster and D. simulans provides evidence for divergence of cis-regulatory sequences in the achaete-scute gene complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

High sequence turnover in the regulatory regions of the developmental gene hunchback in insects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

African and North American populations of Drosophila melanogaster are very different at the DNA level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Detection and quantification of concerted evolution and molecular drive.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Molecular phylogeny and divergence times of drosophilid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Concerted evolution, molecular drive and natural selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

A test for adaptive change in DNA sequences controlling transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Control elements of the Drosophila segmentation gene fushi tarazu.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Analysis of the ftz upstream element: germ layer-specific enhancers are independently autoregulated.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207857

28 October 2018

Phylogenetic footprinting to find functional DNA elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/22073317

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic footprinting reveals multiple regulatory elements involved in control of the meiotic recombination gene, REC102

1 reference

https://pubmed.ncbi.nlm.nih.gov/22073317

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple method for DNaseI footprinting analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22073317

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0027376

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

2011PLoSO...627376B

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

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