(Q34074395)

30 July 2017

title

Experimental evaluation of topological parameters determining protein-folding rates (English)

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30 July 2017

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Erik J Miller

1

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30 July 2017

Kael F Fischer

series ordinal

2

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30 July 2017

Susan Marqusee

series ordinal

3

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30 July 2017

language of work or name

English

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publication date

29 July 2002

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

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30 July 2017

volume

99

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30 July 2017

issue

16

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30 July 2017

page(s)

10359-10363

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Accurate computer-based design of a new backbone conformation in the second turn of protein L

30 July 2017

cites work

1 reference

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Computer-based redesign of a protein folding pathway

5 July 2018

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Protein folding theory: from lattice to all-atom models

5 July 2018

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Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

5 July 2018

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Different circular permutations produced different folding nuclei in proteins: a computational study

5 July 2018

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A rapid test for identification of autonomous folding units in proteins.

5 July 2018

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Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

5 July 2018

1 reference

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Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

5 July 2018

1 reference

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Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

5 July 2018

1 reference

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Protein folding as a diffusional process

5 July 2018

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A simple model for calculating the kinetics of protein folding from three-dimensional structures

5 July 2018

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Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

5 July 2018

1 reference

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A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

5 July 2018

1 reference

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Circular permutation and receptor insertion within green fluorescent proteins

5 July 2018

1 reference

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Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots

5 July 2018

1 reference

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Folding of circular and permuted chymotrypsin inhibitor 2: retention of the folding nucleus

5 July 2018

1 reference

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Contact order, transition state placement and the refolding rates of single domain proteins.

5 July 2018

1 reference

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The early folding kinetics of apomyoglobin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Favourable native-like helical local interactions can accelerate protein folding

5 July 2018

1 reference

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Different folding transition states may result in the same native structure

5 July 2018

1 reference

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Are turns required for the folding of ribonuclease T1?

5 July 2018

1 reference

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

5 July 2018

1 reference

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Crystal structure of the ribosomal protein S6 from Thermus thermophilus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Entropic effects of disulphide bonds on protein stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Principles that govern the folding of protein chains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

5 July 2018

1 reference

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The mechanism of alpha-helix formation by peptides

5 July 2018

1 reference

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How do small single-domain proteins fold?

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

3 The preparation of guanidine hydrochloride

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

On the relationship between protein stability and folding kinetics: a comparative study of the N-terminal domains of RNase HI, E. coli and Bacillus stearothermophilus L9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Preorganized secondary structure as an important determinant of fast protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Elucidating the folding problem of helical peptides using empirical parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Glutamine, alanine or glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

Loop length, intramolecular diffusion and protein folding

28 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Folding of circular permutants with decreased contact order: general trend balanced by protein stability 1 1Edited by A. R. Fersht

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Loop length, intramolecular diffusion and protein folding

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124919

28 October 2018

Protein-folding dynamics

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Circular permutation of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Systematic circular permutation of an entire protein reveals essential folding elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Cysteine scanning mutagenesis at 40 of 76 positions in villin headpiece maps the F-actin binding site and structural features of the domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Protein folding dynamics: quantitative comparison between theory and experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

Diffusional barrier crossing in a two-state protein folding reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162219099

21 January 2018

Identifiers

DOI

10.1073/PNAS.162219099

1 reference

30 July 2017

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1 reference

30 July 2017

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