(Q34079107)

30 July 2017

title

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins (English)

1 reference

30 July 2017

6

Aron Marchler-Bauer

0 references

Stephen H. Bryant

7

object named as

Stephen H Bryant

1 reference

30 July 2017

9

Anna R Panchenko

1 reference

30 July 2017

Benjamin A Shoemaker

1

1 reference

30 July 2017

Dachuan Zhang

2

1 reference

30 July 2017

Manoj Tyagi

3

1 reference

30 July 2017

Ratna R Thangudu

4

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30 July 2017

Jessica H Fong

5

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30 July 2017

Thomas Madej

8

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30 July 2017

language of work or name

English

0 references

publication date

18 November 2011

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30 July 2017

published in

Nucleic Acids Research

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30 July 2017

volume

40

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30 July 2017

issue

Database issue

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30 July 2017

page(s)

D834-40

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Creative Commons Attribution-NonCommercial 3.0 Unported

30 July 2017

copyright license

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

CDD: a Conserved Domain Database for the functional annotation of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Database resources of the National Center for Biotechnology Information

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

The RCSB Protein Data Bank: redesigned web site and web services

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Knowledge-based annotation of small molecule binding sites in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Inference of macromolecular assemblies from crystalline state

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

3D-partner: a web server to infer interacting partners and binding models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

MMDB: annotating protein sequences with Entrez's 3D-structure database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Ulysses - an application for the projection of molecular interactions across species.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

Protein interaction mapping in C. elegans using proteins involved in vulval development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245142

3did Update: domain-domain and peptide-mediated interactions of known 3D structure

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

meta-PPISP: a meta web server for protein-protein interaction site prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

WSsas: a web service for the annotation of functional residues through structural homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

HomPPI: a class of sequence homology based protein-protein interface prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

PredUs: a web server for predicting protein interfaces using structural neighbors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

NCBI Reference Sequences: current status, policy and new initiatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

1,000 structures and more from the MCSG.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR997

21 January 2018

Identifiers

DOI

10.1093/NAR/GKR997

1 reference

journals/nar/ShoemakerZTTFMBMP12

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference