(Q34080058)

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Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites (English)

1 reference

Europe PubMed Central

30 July 2017

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Trypanosoma brucei

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Tim Nicolai Siegel

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Tim Nicolai Siegel

1

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author name string

Doeke R Hekstra

2

1 reference

Europe PubMed Central

30 July 2017

Xuning Wang

3

1 reference

Europe PubMed Central

30 July 2017

Scott Dewell

4

1 reference

Europe PubMed Central

30 July 2017

George A M Cross

5

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Europe PubMed Central

30 July 2017

language of work or name

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publication date

12 April 2010

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Europe PubMed Central

30 July 2017

Nucleic Acids Research

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Europe PubMed Central

30 July 2017

38

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Europe PubMed Central

30 July 2017

4946-4957

1 reference

Europe PubMed Central

30 July 2017

15

1 reference

Europe PubMed Central

30 July 2017

copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

7 November 2016

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April 2022 Public Data File from Crossref

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Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

1 reference

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5 July 2018

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

1 reference

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5 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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5 July 2018

A comprehensive analysis of Trypanosoma brucei mitochondrial proteome

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5 July 2018

The trypanosome transcriptome is remodelled during differentiation but displays limited responsiveness within life stages

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

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5 July 2018

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

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The transcriptional landscape of the yeast genome defined by RNA sequencing

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5 July 2018

Different trans RNA splicing events in bloodstream and procyclic Trypanosoma brucei

1 reference

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5 July 2018

In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

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5 July 2018

Cell cycle regulation in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Post-transcriptional control of nuclear-encoded cytochrome oxidase subunits in Trypanosoma brucei: evidence for genome-wide conservation of life-cycle stage-specific regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Systematic study of sequence motifs for RNA trans splicing in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

The Genome of the African Trypanosome Trypanosoma brucei

1 reference

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5 July 2018

Molecular regulation of the life cycle of African trypanosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Life without transcriptional control? From fly to man and back again

1 reference

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5 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3'-untranslated region element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

New ways of initiating translation in eukaryotes?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Do the 5'untranslated domains of human cDNAs challenge the rules for initiation of translation (or is it vice versa)?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

AU-rich elements in the 3'-untranslated region of a new mucin-type gene family of Trypanosoma cruzi confers mRNA instability and modulates translation efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

The African trypanosome genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

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Eukaryotic mRNAs encoding abundant and scarce proteins are statistically dissimilar in many structural features

1 reference

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Exonic sequences in the 5' untranslated region of alpha-tubulin mRNA modulate trans splicing in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Cell cycle regulation of RPA1 transcript levels in the trypanosomatid Crithidia fasciculata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Elements in the 3' untranslated region of procyclin mRNA regulate expression in insect forms of Trypanosoma brucei by modulating RNA stability and translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Mechanisms of developmental regulation in Trypanosoma brucei: a polypyrimidine tract in the 3'-untranslated region of a surface protein mRNA affects RNA abundance and translation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Sequences within the 5' untranslated region regulate the levels of a kinetoplast DNA topoisomerase mRNA during the cell cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

A conserved stem-loop structure in the 3' untranslated region of procyclin mRNAs regulates expression in Trypanosoma brucei.

1 reference

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5 July 2018

Hierarchies of RNA-processing signals in a trypanosome surface antigen mRNA precursor

1 reference

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5 July 2018

The nonamer UUAUUUAUU is the key AU-rich sequence motif that mediates mRNA degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

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Apparent discontinuous transcription of Trypanosoma brucei variant surface antigen genes

1 reference

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5 July 2018

Polygene transcripts are precursors to calmodulin mRNAs in trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Continuous cultivation of Trypanosoma brucei blood stream forms in a medium containing a low concentration of serum protein without feeder cell layers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Cultivation and in vitro cloning or procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Short communication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926603

5 July 2018

Identification of a small RNA containing the trypanosome spliced leader: a donor of shared 5' sequences of trypanosomatid mRNAs?

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ237

21 January 2018

Role of 3'-untranslated regions in the regulation of hexose transporter mRNAs in Trypanosoma brucei.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ237

21 January 2018

The transcriptomes of Trypanosoma brucei Lister 427 and TREU927 bloodstream and procyclic trypomastigotes.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ237

21 January 2018

Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ237

21 January 2018

Coupling of poly(A) site selection and trans-splicing in Leishmania

1 reference

https://pubmed.ncbi.nlm.nih.gov/20385579

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20385579

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective di- or trimethylation of histone H3 lysine 76 by two DOT1 homologs is important for cell cycle regulation in Trypanosoma brucei

1 reference

https://pubmed.ncbi.nlm.nih.gov/20385579

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ237

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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