(Q34084539)

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CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models

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scholarly article

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Europe PubMed Central

30 July 2017

CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models (English)

1 reference

Europe PubMed Central

30 July 2017

Nikos C Papandreou

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24978609%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

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Judith H Willis

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10 June 2020

Stavros J Hamodrakas

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Stavros J Hamodrakas

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10 June 2020

author name string

Zoi S Ioannidou

1

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10 June 2020

Margarita C Theodoropoulou

2

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10 June 2020

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publication date

27 June 2014

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30 July 2017

Insect Biochemistry and Molecular Biology

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10 June 2020

52

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10 June 2020

51-59

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10 June 2020

Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses

1 reference

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5 July 2018

Finding the missing honey bee genes: lessons learned from a genome upgrade

1 reference

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5 July 2018

FlyBase 102--advanced approaches to interrogating FlyBase

1 reference

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5 July 2018

Update on activities at the Universal Protein Resource (UniProt) in 2013

1 reference

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5 July 2018

New and continuing developments at PROSITE.

1 reference

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5 July 2018

MonarchBase: the monarch butterfly genome database

1 reference

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5 July 2018

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

1 reference

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5 July 2018

The Pfam protein families database

1 reference

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5 July 2018

The genome of Tetranychus urticae reveals herbivorous pest adaptations

1 reference

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5 July 2018

Proteomic analysis of larval integument, trachea and adult scale from the silkworm, Bombyx mori

1 reference

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5 July 2018

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics

1 reference

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5 July 2018

Genome sequence of the pea aphid Acyrthosiphon pisum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Structural cuticular proteins from arthropods: annotation, nomenclature, and sequence characteristics in the genomics era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Cloning and characterization of a Gasp homolog from the spruce budworm, Choristoneura fumiferana, and its putative role in cuticle formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Annotation and analysis of low-complexity protein families of Anopheles gambiae that are associated with cuticle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Genome-wide identification of cuticular protein genes in the silkworm, Bombyx mori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

The genome of the model beetle and pest Tribolium castaneum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Clustal W and Clustal X version 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Genome sequence of Aedes aegypti, a major arbovirus vector

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Novel cuticular proteins revealed by the honey bee genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

BeetleBase: the model organism database for Tribolium castaneum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Insights into social insects from the genome of the honeybee Apis mellifera

1 reference

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5 July 2018

SilkDB: a knowledgebase for silkworm biology and genomics

1 reference

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5 July 2018

A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

cuticleDB: a relational database of Arthropod cuticular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Properties of catalytic, linker and chitin-binding domains of insect chitinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Studies on proteins in post-ecdysial nymphal cuticle of locust, Locusta migratoria, and cockroach, Blaberus craniifer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Profile hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Amino acid sequence studies on endocuticular proteins from the desert locust, Schistocerca gregaria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Scoring hidden Markov models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Sequence studies of proteins from larval and pupal cuticle of the yellow meal worm, Tenebrio molitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

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Purification and characterization of five cuticular proteins from the spider Araneus diadematus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

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Hidden Markov models in computational biology. Applications to protein modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Insect cuticular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

5 July 2018

Proteomic and transcriptomic analyses of rigid and membranous cuticles and epidermis from the elytra and hindwings of the red flour beetle, Tribolium castaneum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Identification of the chitin-binding proteins from the larval proteins of silkworm, Bombyx mori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Genes encoding proteins with peritrophin A-type chitin-binding domains in Tribolium castaneum are grouped into three distinct families based on phylogeny, expression and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

CPF and CPFL, two related gene families encoding cuticular proteins of Anopheles gambiae and other insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Proteomic analysis of cast cuticles from Anopheles gambiae by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

The extensible alloscutal cuticle of the tick, Ixodes ricinus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Cuticular proteins from the horseshoe crab, Limulus polyphemus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

A conserved domain in arthropod cuticular proteins binds chitin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Cuticular proteins from the giant cockroach, Blaberus craniifer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143468

28 October 2018

Identifiers

10.1016/J.IBMB.2014.06.004

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Europe PubMed Central

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10 June 2020

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Europe PubMed Central

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10 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24978609%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

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