(Q34097128)

31 July 2017

Expander: from expression microarrays to networks and functions (English)

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31 July 2017

8

Roded Sharan

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31 July 2017

7

Amos Tanay

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31 July 2017

10

Ron Shamir

1 reference

31 July 2017

Igor Ulitsky

1

1 reference

ORCID Public Data File 2021

Ran Elkon

6

object named as

Ran Elkon

1 reference

31 July 2017

3

Seagull Shavit

1 reference

31 July 2017

Adi Maron-Katz

2

1 reference

31 July 2017

Dorit Sagir

4

1 reference

31 July 2017

Chaim Linhart

5

1 reference

31 July 2017

Yosef Shiloh

9

1 reference

31 July 2017

28 January 2010

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31 July 2017

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31 July 2017

5

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31 July 2017

303-322

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31 July 2017

2

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https://scigraph.springernature.com/pub.10.1038/nprot.2009.230

31 July 2017

0 references

cites work

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

EXPANDER--an integrative program suite for microarray data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Discovering statistically significant biclusters in gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Functional genomic delineation of TLR-induced transcriptional networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

SPIKE--a database, visualization and analysis tool of cellular signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Regulatory networks define phenotypic classes of human stem cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Identification of functional modules using network topology and high-throughput data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

GEPAS, a web-based tool for microarray data analysis and interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Genesis: cluster analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Integration of biological networks and gene expression data using Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Retooling Leishmania metabolism: from sand fly gut to human macrophage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Genomic analysis of COP9 signalosome function in Drosophila melanogaster reveals a role in temporal regulation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Gene expression signature of human cancer cell lines treated with the ras inhibitor salirasib (S-farnesylthiosalicylic acid).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

E2F1 identified by promoter and biochemical analysis as a central target of glioblastoma cell-cycle arrest in response to Ras inhibition

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Comprehensive microRNA profiling reveals a unique human embryonic stem cell signature dominated by a single seed sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Requirement of bic/microRNA-155 for normal immune function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Summaries of Affymetrix GeneChip probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

BioMart--biological queries made easy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

21 January 2018

2 references

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

21 January 2018

12 December 2020

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Systematic determination of genetic network architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Co-clustering of biological networks and gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Discovering regulatory and signalling circuits in molecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Network-based analysis of affected biological processes in type 2 diabetes models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Genomic analysis of regulatory network dynamics reveals large topological changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Allegro: analyzing expression and sequence in concert to discover regulatory programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Most mammalian mRNAs are conserved targets of microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

IntAct: an open source molecular interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Missing value estimation methods for DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Computational analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

TRANSFAC: an integrated system for gene expression regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Inference of miRNA targets using evolutionary conservation and pathway analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

microRNA target predictions in animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

The impact of microRNAs on protein output

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Reactome knowledgebase of human biological pathways and processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Using GenePattern for gene expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

TM4: a free, open-source system for microarray data management and analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Analysis of gene-expression data using J-Express

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Data storage and analysis in ArrayExpress and Expression Profiler

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

Principal components analysis to summarize microarray experiments: application to sporulation time series

31 March 2020

1 reference

12 December 2020

Macrophage growth factor CSF-1 stimulates human monocyte production of interferon, tumor necrosis factor, and colony stimulating activity

1 reference

12 December 2020

CLICK: a clustering algorithm with applications to gene expression analysis.

1 reference

12 December 2020

Fas mediates apoptosis in human monocytes by a reactive oxygen intermediate dependent pathway

1 reference

12 December 2020

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.230

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NPROT.2009.230

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference