(Q34098437)

31 July 2017

title

Conservation and relative importance of residues across protein-protein interfaces (English)

1 reference

31 July 2017

Mainak Guharoy

1

1 reference

31 July 2017

Pinak Chakrabarti

series ordinal

2

1 reference

31 July 2017

language of work or name

English

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publication date

12 October 2005

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31 July 2017

number of pages

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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31 July 2017

volume

102

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31 July 2017

issue

43

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31 July 2017

page(s)

15447-15452

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Protein sequence entropy is closely related to packing density and hydrophobicity

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Prediction of functional sites by analysis of sequence and structure conservation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Computational methods of analysis of protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

28 July 2018

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A simple physical model for binding energy hot spots in protein-protein complexes

28 July 2018

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Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

28 July 2018

1 reference

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Evolutionary predictions of binding surfaces and interactions.

28 July 2018

1 reference

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Unraveling hot spots in binding interfaces: progress and challenges

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Identification of protein oligomerization states by analysis of interface conservation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Convergent solutions to binding at a protein-protein interface

28 July 2018

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28 July 2018

The Protein Data Bank

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Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

28 July 2018

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Residue depth: a novel parameter for the analysis of protein structure and stability.

28 July 2018

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The atomic structure of protein-protein recognition sites

28 July 2018

1 reference

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Anatomy of hot spots in protein interfaces

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Studies of protein-protein interfaces: a statistical analysis of the hydrophobic effect

28 July 2018

1 reference

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Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

An evolutionary trace method defines binding surfaces common to protein families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

A role for surface hydrophobicity in protein-protein recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

A hot spot of binding energy in a hormone-receptor interface

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

The interpretation of protein structures: Estimation of static accessibility

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Hydrophobic bonding and accessible surface area in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Database of homology-derived protein structures and the structural meaning of sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Crystal packing in six crystal forms of pancreatic ribonuclease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Conservation helps to identify biologically relevant crystal contacts

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

21 January 2018

1 reference

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Dissecting subunit interfaces in homodimeric proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

A dissection of specific and non-specific protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Statistical analysis and prediction of protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Protein-protein interfaces: analysis of amino acid conservation in homodimers

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Discriminating between homodimeric and monomeric proteins in the crystalline state

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266102

Ten thousand interactions for the molecular biologist

28 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505425102

Hydrophobic patches on protein subunit interfaces: characteristics and prediction

21 January 2018

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12 December 2020

Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers

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12 December 2020

Non-functional conserved residues in globins and their possible role as a folding nucleus

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12 December 2020

Dissecting protein-protein recognition sites

1 reference

12 December 2020

What is the Minimum Number of Letters Required to Fold a Protein?

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0505425102

1 reference

31 July 2017

0 references

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31 July 2017

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