(Q35022059)

5 August 2017

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces (English)

1 reference

protein-protein interaction

5 August 2017

1 reference

1

1 reference

5 August 2017

4

Ruth Nussinov

1 reference

5 August 2017

3

Haim Wolfson

1 reference

5 August 2017

Tal Elkayam

2

1 reference

PubMed ID

12730379

5 August 2017

language of work or name

English

0 references

publication date

1 May 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

1 reference

5 August 2017

100

1 reference

5 August 2017

5772-5777

1 reference

5 August 2017

10

1 reference

Insufficiently dehydrated hydrogen bonds as determinants of protein interactions

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Analysing six types of protein-protein interfaces

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Side-chain conformational entropy at protein-protein interfaces.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

A simple physical model for binding energy hot spots in protein-protein complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Principles of docking: An overview of search algorithms and a guide to scoring functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Analysis of homodimeric protein interfaces by graph-spectral methods.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Unraveling hot spots in binding interfaces: progress and challenges

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Protein functional epitopes: hot spots, dynamics and combinatorial libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Automated multiple structure alignment and detection of a common substructural motif.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Luxury accommodations: the expanding role of structural plasticity in protein-protein interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Conservation of polar residues as hot spots at protein interfaces.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Environment of tryptophan side chains in proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Convergent solutions to binding at a protein-protein interface

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

The maximal affinity of ligands

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Identification of kinetically hot residues in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Anatomy of hot spots in protein interfaces

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Analysis of protein-protein interaction sites using surface patches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Hydrophobic folding units at protein-protein interfaces: implications to protein folding and to protein-protein association

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Studies of protein-protein interfaces: a statistical analysis of the hydrophobic effect

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Protein binding versus protein folding: the role of hydrophilic bridges in protein associations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Protein clefts in molecular recognition and function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

What makes a binding site a binding site?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

An evolutionary trace method defines binding surfaces common to protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Principles of protein-protein interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

A hot spot of binding energy in a hormone-receptor interface

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

The interpretation of protein structures: Estimation of static accessibility

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

The Protein Data Bank: a computer-based archival file for macromolecular structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

A new method to detect related function among proteins independent of sequence and fold homology.

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

Prediction of protein-protein interaction sites using patch analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

MUSTA--a general, efficient, automated method for multiple structure alignment and detection of common motifs: application to proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

Protein design from in silico dynamic information: the emergence of the 'turn-dock-lock' motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

Protein-protein interfaces: analysis of amino acid conservation in homodimers.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Examination of shape complementarity in docking of unbound proteins.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156276

Principles of docking: An overview of search algorithms and a guide to scoring functions

25 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1030237100

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

21 January 2018

1 reference

12 December 2020

Shape complementarity at the hemoglobin alpha 1 beta 1 subunit interface

1 reference

12 December 2020

Comparison of a structural and a functional epitope

1 reference

12 December 2020

Specificity in protein-protein recognition: conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex

1 reference

12 December 2020

Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions

1 reference

12 December 2020

Protein surface roughness and small molecular binding sites

1 reference

12 December 2020

Molecular recognition in the post-reductionist era

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1030237100

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference

PubMed ID

12730379