(Q43814574)

English

Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface

scientific article published in August 2002

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

energy landscape

1 reference

based on heuristic

inferred from title

6

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Gennady Verkhivker

object named as

Gennady M Verkhivker

1

0 references

author name string

Djamal Bouzida

2

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Daniel K Gehlhaar

3

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Paul A Rejto

4

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Stephan T Freer

5

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

language of work or name

0 references

publication date

1 August 2002

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

48

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

539-557

1 reference

Europe PubMed Central

PubMed publication ID

27 November 2017

Theory of biomolecular recognition

1 reference

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21 January 2018

Folding and binding cascades: dynamic landscapes and population shifts

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Protein conformational substates from X-ray crystallography

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Folding and binding cascades: shifts in energy landscapes

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Point mutations and sequence variability in proteins: redistributions of preexisting populations.

1 reference

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21 January 2018

Proteins with similar architecture exhibit similar large-scale dynamic behavior

1 reference

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21 January 2018

Correlation between binding and dynamics at SH2 domain interfaces

1 reference

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21 January 2018

The 'dynamics' in the thermodynamics of binding

1 reference

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21 January 2018

Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex

1 reference

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21 January 2018

The effect of inhibitor binding on the structural stability and cooperativity of the HIV-1 protease.

1 reference

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21 January 2018

The propagation of binding interactions to remote sites in proteins: analysis of the binding of the monoclonal antibody D1.3 to lysozyme

1 reference

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21 January 2018

Can allosteric regulation be predicted from structure?

1 reference

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21 January 2018

HIV-1 protease inhibitors: enthalpic versus entropic optimization of the binding affinity.

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21 January 2018

A hot spot of binding energy in a hormone-receptor interface

1 reference

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21 January 2018

Unraveling hot spots in binding interfaces: progress and challenges

1 reference

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21 January 2018

Principles of protein-protein interactions

1 reference

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21 January 2018

The atomic structure of protein-protein recognition sites

1 reference

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21 January 2018

Anatomy of hot spots in protein interfaces

1 reference

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21 January 2018

Protein functional epitopes: hot spots, dynamics and combinatorial libraries

1 reference

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21 January 2018

Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition

1 reference

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21 January 2018

Structural plasticity in a remodeled protein-protein interface

1 reference

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21 January 2018

Luxury accommodations: the expanding role of structural plasticity in protein-protein interactions

1 reference

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21 January 2018

Recognition between flexible protein molecules: induced and assisted folding

1 reference

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21 January 2018

Convergent solutions to binding at a protein-protein interface

1 reference

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21 January 2018

Folding funnels, binding funnels, and protein function

1 reference

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21 January 2018

Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations

1 reference

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21 January 2018

Funnels, pathways, and the energy landscape of protein folding: a synthesis

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Principles of protein folding--a perspective from simple exact models.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

From Levinthal to pathways to funnels

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Theory of protein folding: the energy landscape perspective

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

1 reference

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21 January 2018

Protein folding theory: from lattice to all-atom models

1 reference

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21 January 2018

Computational methods to predict binding free energy in ligand-receptor complexes

1 reference

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21 January 2018

Flexible docking and design.

1 reference

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21 January 2018

Unraveling principles of lead discovery: from unfrustrated energy landscapes to novel molecular anchors.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

A mean field model of ligand-protein interactions: implications for the structural assessment of human immunodeficiency virus type 1 protease complexes and receptor-specific binding

1 reference

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21 January 2018

Exploring the energy landscapes of molecular recognition by a genetic algorithm: analysis of the requirements for robust docking of HIV-1 protease and FKBP-12 complexes

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Hierarchy of simulation models in predicting molecular recognition mechanisms from the binding energy landscapes: structural analysis of the peptide complexes with SH2 domains.

1 reference

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21 January 2018

A systematic study of low-resolution recognition in protein--protein complexes

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

How common is the funnel-like energy landscape in protein-protein interactions?

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Parallel simulated tempering dynamics of ligand–protein binding with ensembles of protein conformations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10164

21 January 2018

Deciphering common failures in molecular docking of ligand-protein complexes.

1 reference

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21 January 2018

Hierarchy of simulation models in predicting structure and energetics of the Src SH2 domain binding to tyrosyl phosphopeptides

1 reference

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21 January 2018

Towards understanding the mechanisms of molecular recognition by computer simulations of ligand-protein interactions

1 reference

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21 January 2018

Semianalytical treatment of solvation for molecular mechanics and dynamics

1 reference

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21 January 2018

Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO)

1 reference

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21 January 2018

Molecular dynamics and free-energy calculations applied to affinity maturation in antibody 48G7.

1 reference

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21 January 2018

Binding of a diverse set of ligands to avidin and streptavidin: an accurate quantitative prediction of their relative affinities by a combination of molecular mechanics and continuum solvent models

1 reference

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21 January 2018

Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model

1 reference

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21 January 2018

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

1 reference

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21 January 2018

Monte Carlo simulations in generalized ensemble: Multicanonical algorithm versus simulated tempering.

1 reference

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21 January 2018

Replica-exchange molecular dynamics method for protein folding

1 reference

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21 January 2018

Navigating ligand–protein binding free energy landscapes: universality and diversity of protein folding and molecular recognition mechanisms

1 reference

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21 January 2018

Rational design of faster associating and tighter binding protein complexes.

1 reference

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21 January 2018

Free energy landscapes of encounter complexes in protein-protein association

1 reference

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21 January 2018

Protein docking along smooth association pathways

1 reference

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21 January 2018

Protein-protein association kinetics and protein docking.

1 reference

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21 January 2018

Soft protein-protein docking in internal coordinates

1 reference

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21 January 2018

On the transition coordinate for protein folding

1 reference

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21 January 2018

Landscape approaches for determining the ensemble of folding transition states: success and failure hinge on the degree of frustration

1 reference

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21 January 2018

Generalized-ensemble Monte Carlo method for systems with rough energy landscape

1 reference

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21 January 2018

Identifiers

10.1002/PROT.10164

1 reference

https://api.fatcat.wiki/v0/release/jts5vk3kuvfyfcwpnqv3iwepwe

30 July 2022

based on heuristic

mapped directly with Wikidata item

release_jts5vk3kuvfyfcwpnqv3iwepwe

1 reference

https://api.fatcat.wiki/v0/release/jts5vk3kuvfyfcwpnqv3iwepwe

30 July 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

https://api.fatcat.wiki/v0/release/jts5vk3kuvfyfcwpnqv3iwepwe

30 July 2022

based on heuristic

mapped directly with Wikidata item

ResearchGate publication ID

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