(Q34099103)

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Chemical versus mechanical perturbations on the protonation state of arginine in complex lipid membranes: insights from microscopic pKa calculations

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Europe PubMed Central

PubMed publication ID

31 July 2017

Chemical versus mechanical perturbations on the protonation state of arginine in complex lipid membranes: insights from microscopic pKa calculations (English)

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

1

object named as

Jejoong Yoo

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

author name string

Qiang Cui

2

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

language of work or name

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publication date

1 September 2010

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Biophysical Journal

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Europe PubMed Central

PubMed publication ID

31 July 2017

99

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

1529-1538

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

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5 July 2018

Hydrophobically stabilized open state for the lateral gate of the Sec translocon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Structure and hydration of membranes embedded with voltage-sensing domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Arginine-rich cell-penetrating peptides.

1 reference

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5 July 2018

Protein contents in biological membranes can explain abnormal solvation of charged and polar residues

1 reference

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5 July 2018

Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption.

1 reference

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5 July 2018

A Nonlinear Elasticity Model of Macromolecular Conformational Change Induced by Electrostatic Forces

1 reference

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5 July 2018

Emerging roles for lipids in shaping membrane-protein function.

1 reference

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5 July 2018

Random walk in orthogonal space to achieve efficient free-energy simulation of complex systems

1 reference

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5 July 2018

Lipids on the move: simulations of membrane pores, domains, stalks and curves

1 reference

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5 July 2018

Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

1 reference

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5 July 2018

Mediation, modulation, and consequences of membrane-cytoskeleton interactions

1 reference

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5 July 2018

pKa of residue 66 in Staphylococal nuclease. I. Insights from QM/MM simulations with conventional sampling.

1 reference

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5 July 2018

A continuum method for determining membrane protein insertion energies and the problem of charged residues

1 reference

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5 July 2018

Distribution of amino acids in a lipid bilayer from computer simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Does arginine remain protonated in the lipid membrane? Insights from microscopic pKa calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Structural determinants of water permeability through the lipid membrane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Is arginine charged in a membrane?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

The MARTINI force field: coarse grained model for biomolecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Partitioning of amino acid side chains into lipid bilayers: results from computer simulations and comparison to experiment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

On the thermodynamic stability of a charged arginine side chain in a transmembrane helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

How proteins produce cellular membrane curvature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Probing ion-channel pores one proton at a time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Interface connections of a transmembrane voltage sensor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

GROMACS: fast, flexible, and free

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Recognition of transmembrane helices by the endoplasmic reticulum translocon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Proton binding to proteins: pK(a) calculations with explicit and implicit solvent models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Pathway for polyarginine entry into mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

How proteins move lipids and lipids move proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Structure of lipid bilayers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2931746

5 July 2018

Effect of chain length and unsaturation on elasticity of lipid bilayers

1 reference

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Membrane lateral compressibility determined by NMR and x-ray diffraction: effect of acyl chain polyunsaturation

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Prediction of pH-dependent properties of proteins

1 reference

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Combined influence of cholesterol and synthetic amphiphillic peptides upon bilayer thickness in model membranes

1 reference

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Molecular view of cholesterol flip-flop and chemical potential in different membrane environments.

1 reference

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28 October 2018

Perturbations of membrane structure by cholesterol and cholesterol derivatives are determined by sterol orientation

1 reference

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28 October 2018

Thermodynamic analysis of the effect of cholesterol on dipalmitoylphosphatidylcholine lipid membranes

1 reference

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1 reference

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Molecular code for transmembrane-helix recognition by the Sec61 translocon

1 reference

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1 reference

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1 reference

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1 reference

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Membrane stiffness and channel function

1 reference

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12 December 2020

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10.1016/J.BPJ.2010.06.048

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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