(Q34099700)

23 September 2017

Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees (English)

1 reference

23 September 2017

1 reference

0 references

Stephen A Smith

2

0 references

author name string

Fernando Izquierdo-Carrasco

series ordinal

1

1 reference

PMC publication ID

3267785

23 September 2017

Alexandros Stamatakis

series ordinal

3

1 reference

23 September 2017

13 December 2011

1 reference

23 September 2017

1 reference

23 September 2017

12

1 reference

23 September 2017

470

1 reference

Creative Commons Attribution 2.0 Generic

23 September 2017

start time

1 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Understanding angiosperm diversification using small and large phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

FastTree 2--approximately maximum-likelihood trees for large alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

INDELible: a flexible simulator of biological sequence evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Rates of molecular evolution are linked to life history in flowering plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Recent developments in the MAFFT multiple sequence alignment program

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

BEAST: Bayesian evolutionary analysis by sampling trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Open source clustering software

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

MrBayes 3: Bayesian phylogenetic inference under mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Pyrosequencing sheds light on DNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

Evolutionary trees from DNA sequences: A maximum likelihood approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-470

Column sorting: rapid calculation of the phylogenetic likelihood function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-470

Phylogenetic estimation with partial likelihood tensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-470

Does choice in model selection affect maximum likelihood analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-470

AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267785

28 October 2018

Identifiers

DOI

10.1186/1471-2105-12-470

1 reference

journals/bmcbi/Izquierdo-CarrascoSS11

23 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

3267785

23 September 2017

PubMed publication ID

22165866

1 reference

PMC publication ID

3267785