(Q34107968)

31 July 2017

title

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records (English)

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Taxonomy database of the U.S. National Center for Biotechnology Information

31 July 2017

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author

Guy R. Cochrane

9

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31 July 2017

3

Tanya Barrett

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Ilene Karsch-Mizrachi

10

object named as

Ilene Karsch-Mizrachi

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31 July 2017

Helen Parkinson

4

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Scott Federhen

1

object named as

Scott Federhen

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James Ostell

5

object named as

James Ostell

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31 July 2017

Karen Clark

2

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31 July 2017

Tanya Barrett

3

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31 July 2017

Yuichi Kodama

6

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31 July 2017

Jun Mashima

7

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31 July 2017

Yasukazu Nakamura

8

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31 July 2017

publication date

29 January 2014

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Standards in genomic sciences

31 July 2017

published in

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31 July 2017

volume

9

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31 July 2017

issue

3

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31 July 2017

page(s)

1275-1277

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ArrayExpress update--trends in database growth and links to data analysis tools

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

NCBI GEO: archive for functional genomics data sets--update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

The International Nucleotide Sequence Database Collaboration.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

The NCBI Taxonomy database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

The BioSample Database (BioSD) at the European Bioinformatics Institute

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

International Code of Nomenclature of Bacteria: Bacteriological Code, 1990 Revision

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

The complete genome sequence of Escherichia coli K-12

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149001

5 July 2018

Identifiers

DOI

10.4056/SIGS.4851102

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Dimensions Publication ID

31 July 2017

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31 July 2017

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