(Q34115329)

31 July 2017

title

A comprehensive and universal method for assessing the performance of differential gene expression analyses (English)

1 reference

31 July 2017

Mikhail G Dozmorov

1

0 references

Robert E. Hurst

Robert E Hurst

series ordinal

3

0 references

Joel M Guthridge

Joel M Guthridge

series ordinal

2

0 references

author name string

Igor M Dozmorov

series ordinal

4

1 reference

31 July 2017

language of work or name

English

0 references

publication date

9 September 2010

1 reference

31 July 2017

1 reference

31 July 2017

volume

5

1 reference

31 July 2017

issue

9

1 reference

Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

9 September 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

limma

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2936572

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Gene expression profiling of human alveolar macrophages infected by B. anthracis spores demonstrates TNF-alpha and NF-kappab are key components of the innate immune response to the pathogen

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Internal standard-based analysis of microarray data. Part 1: analysis of differential gene expressions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

A comparison on effects of normalisations in the detection of differentially expressed genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Microarray-based gene set analysis: a comparison of current methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

A comparison of statistical tests for detecting differential expression using Affymetrix oligonucleotide microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Evaluation of microarray data normalization procedures using spike-in experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Evaluation of normalization methods for cDNA microarray data by k-NN classification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

NCBI GEO: mining millions of expression profiles--database and tools

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Hypervariable genes--experimental error or hidden dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Empirical evaluation of data transformations and ranking statistics for microarray analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Towards sound epistemological foundations of statistical methods for high-dimensional biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Evaluation of normalization methods for microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Receiver operating characteristic analysis: a general tool for DNA array data filtration and performance estimation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

An associative analysis of gene expression array data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Statistical approaches to the analysis of receiver operating characteristic (ROC) curves

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936572

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012657

ROC analysis with multiple classes and multiple tests: methodology and its application in microarray studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012657

A model for measurement error for gene expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012657

The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012657

The Fat Embolism Syndrome, Results of a Therapeutic Regime

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844739

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0012657

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference