(Q34137596)

31 July 2017

title

Using the Velvet de novo assembler for short-read sequencing technologies (English)

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31 July 2017

Daniel R Zerbino

1

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publication date

1 September 2010

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Current Protocols in Bioinformatics

31 July 2017

published in

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31 July 2017

volume

Chapter 11

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31 July 2017

page(s)

Unit 11.5

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describes a project that uses

31 July 2017

Velvet assembler

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cites work

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

De novo assembly of human genomes with massively parallel short read sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

ABySS: a parallel assembler for short read sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

ALLPATHS: de novo assembly of whole-genome shotgun microreads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

An Eulerian path approach to DNA fragment assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952100

De novo fragment assembly with short mate-paired reads: Does the read length matter?

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2F0471250953.BI1105S31

10.1002/0471250953.BI1105S31

21 January 2018

Identifiers

DOI

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31 July 2017

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31 July 2017

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