(Q34141458)

31 July 2017

Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses (English)

1 reference

31 July 2017

1 reference

D Lallias

4

0 references

Christopher Quince

object named as

C Quince

5

0 references

author name string

V G Fonseca

1

1 reference

31 July 2017

V G Fonseca

2

1 reference

31 July 2017

B Nichols

3

1 reference

31 July 2017

G R Carvalho

6

1 reference

31 July 2017

D M Power

7

1 reference

31 July 2017

S Creer

8

1 reference

31 July 2017

language of work or name

English

0 references

publication date

25 January 2012

1 reference

31 July 2017

Nucleic Acids Research

1 reference

31 July 2017

40

1 reference

31 July 2017

9

1 reference

31 July 2017

e66

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Field guide to next-generation DNA sequencers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Eukaryotic richness in the abyss: insights from pyrotag sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Removing noise from pyrosequenced amplicons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Second-generation environmental sequencing unmasks marine metazoan biodiversity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Accurate determination of microbial diversity from 454 pyrosequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

UNAFold: software for nucleic acid folding and hybridization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Unveiling new microbial eukaryotes in the surface ocean

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Microbial population structures in the deep marine biosphere

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Accuracy and quality of massively parallel DNA pyrosequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Microbial diversity in the deep sea and the underexplored "rare biosphere"

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Defining operational taxonomic units using DNA barcode data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Toxicity in animals. Trends in evolution?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Stimulation and suppression of PCR-mediated recombination

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

A molecular evolutionary framework for the phylum Nematoda

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

DNA recombination during PCR.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

DNA sequencing with chain-terminating inhibitors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

The 'rare biosphere': a reality check

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Evaluating putative chimeric sequences from PCR-amplified products.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Reducing chimera formation during PCR amplification to ensure accurate genotyping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Towards a unifying approach to diversity measures: bridging the gap between the Shannon entropy and Rao's quadratic index.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Fluorescence-based method for measuring and determining the mechanisms of recombination in quantitative PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Massive parallel MHC genotyping: titanium that shines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS002

Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

PCR-mediated recombination of the amplification products of the Hibiscus tiliaceus cytosolic glyceraldehyde-3-phosphate dehydrogenase gene.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Genome sequencing in microfabricated high-density picolitre reactors

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351157

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22278883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS002

1 reference

31 July 2017

1 reference

31 July 2017

1 reference