(Q34146939)

31 July 2017

title

Molecular dynamics of anthraquinone DNA intercalators with polyethylene glycol side chains (English)

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31 July 2017

author name string

Shirlene Jackson Beckford

series ordinal

1

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31 July 2017

Dabney W Dixon

series ordinal

2

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31 July 2017

publication date

1 January 2012

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Journal of Biomolecular Structure and Dynamics

31 July 2017

published in

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31 July 2017

volume

29

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31 July 2017

issue

5

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31 July 2017

page(s)

1065-1080

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Designed sequence-specific minor groove ligands

31 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Site-selective DNA binding drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Sequence-selective DNA recognition: natural products and nature's lessons

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Selective binding of small molecules to DNA: application and perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Theoretical study of molecular recognition by Hoechst 33258 derivatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

DNA interaction with naturally occurring antioxidant flavonoids quercetin, kaempferol, and delphinidin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Complex-formation of Ethidium Bromide with poly[d(A-T)].poly[d(A-T)].

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Binding of Hoechst 33258 and its derivatives to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Alprazolam intercalates into DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Anthracycline and anthraquinone anticancer agents: current status and recent developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

New developments in antitumor anthracyclines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Recent developments in the field of antitumour anthracyclines

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Anthracyclines: molecular advances and pharmacologic developments in antitumor activity and cardiotoxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Prodrugs of anthracyclines in cancer chemotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Anthracene-9,10-diones as potential anticancer agents. Synthesis, DNA-binding, and biological studies on a series of 2,6-disubstituted derivatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Substituent position dictates the intercalative DNA-binding mode for anthracene-9,10-dione antitumor drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Molecular Anchoring of Duplex and Triplex DNA by Disubstituted Anthracene-9,10-diones: Calorimetric, UV Melting, and Competition Dialysis Studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

A molecular anchor for stabilizing triple-helical DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

G-quadruplex DNA: a potential target for anti-cancer drug design

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Genotoxicity studies on DNA-interactive telomerase inhibitors with application as anti-cancer agents.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Aminoacyl-anthraquinone conjugates as telomerase inhibitors: synthesis, biophysical and biological evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Amide bond direction modulates G-quadruplex recognition and telomerase inhibition by 2,6 and 2,7 bis-substituted anthracenedione derivatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Growth arrest, apoptosis, and telomere shortening of Barrett's-associated adenocarcinoma cells by a telomerase inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Synthesis, human telomerase inhibition and anti-proliferative studies of a series of 2,7-bis-substituted amido-anthraquinone derivatives.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Synthesis, cytotoxicity and human telomerase inhibition activities of a series of 1,2-heteroannelated anthraquinones and anthra[1,2-d]imidazole-6,11-dione homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Synthesis and structure-activity relationship studies of 4,11-diaminonaphtho[2,3-f]indole-5,10-diones

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

1,4- and 2,6-disubstituted amidoanthracene-9,10-dione derivatives as inhibitors of human telomerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Estimation of the aqueous solubility I: application to organic nonelectrolytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Macromolecular crowding: obvious but underappreciated

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Metabolic buffering exerted by macromolecular crowding on DNA-DNA interactions: origin and physiological significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Molecular crowding effects on structure and stability of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Molecular crowding stabilizes folded RNA structure by the excluded volume effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Electrostatic contribution to the energy of binding of aromatic ligands with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Partition of thermodynamic energies of drug-DNA complexation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Restrained molecular dynamics studies on complex of adriamycin with DNA hexamer sequence d-CGATCG.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

A computational model for anthracycline binding to DNA: tuning groove-binding intercalators for specific sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Cooperative effects on the formation of intercalation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Relative binding free energy calculations of DNA to daunomycin and its 13-dihydro analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

The antitumor drug nogalamycin forms two different intercalation complexes with d(GCGT).d(ACGC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

DNA recognition by the anthracycline antibiotic respinomycin D: NMR structure of the intercalation complex with d(AGACGTCT)2

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

The R.E.D. tools: advances in RESP and ESP charge derivation and force field library building

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

The implementation of a fast and accurate QM/MM potential method in Amber

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

The Amber biomolecular simulation programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Relating kinetic rates and local energetic roughness by accelerated molecular-dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Interactions between an anthracycline antibiotic and DNA: molecular structure of daunomycin complexed to d(CpGpTpApCpG) at 1.2-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

A trigonal form of the idarubicin:d(CGATCG) complex; crystal and molecular structure at 2.0 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Role of the amino sugar in the DNA binding of disaccharide anthracyclines: crystal structure of the complex MAR70/d(CGATCG).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Contributions of hydroxyethyl groups to the DNA binding affinities of anthracene probes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

DNA binding by pixantrone

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Coupling of local folding to site-specific binding of proteins to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Quantum chemical study of the interaction of the short-chain poly(oxyethylene)s CH3(OCH2CH2)mOCH3 (C1EmC1; m = 1 and 2) with a water molecule in the gas phase and in solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Merging Implicit with Explicit Solvent Simulations: Polyethylene Glycol

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Dynamics of water in biological recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Water at biomolecular binding interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Hydration changes in the association of Hoechst 33258 with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

DNA sequence dependent monomer-dimer binding modulation of asymmetric benzimidazole derivatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Netropsin interactions in the minor groove of d(GGCCAATTGG) studied by a combination of resolution enhancement and ab initio calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Hydration of drug-DNA complexes: greater water uptake for adriamycin compared to daunomycin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Hydration changes for DNA intercalation reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

Stabilization of Three-Way Junctions of DNA under Molecular Crowding Conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525031

10.1080/073911012010525031

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

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