(Q33229875)

24 July 2017

title

Hydration changes in the association of Hoechst 33258 with DNA. (English)

1 reference

24 July 2017

0 references

John R Kiser

1

1 reference

24 July 2017

Richard W Monk

series ordinal

2

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24 July 2017

Rondey L Smalls

series ordinal

3

1 reference

24 July 2017

Jeffrey T Petty

series ordinal

4

1 reference

24 July 2017

language of work or name

English

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publication date

1 December 2005

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24 July 2017

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24 July 2017

volume

44

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24 July 2017

issue

51

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24 July 2017

page(s)

16988-16997

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Association of the minor groove binding drug Hoechst 33258 with d(CGCGAATTCGCG)2: volumetric, calorimetric, and spectroscopic characterizations.

24 July 2017

cites work

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25 November 2018

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25 November 2018

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Characterization of a novel DNA minor-groove complex

25 November 2018

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Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

25 November 2018

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Water at DNA surfaces: ultrafast dynamics in minor groove recognition

25 November 2018

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Spectroscopic studies of the multiple binding modes of a trimethine-bridged cyanine dye with DNA

25 November 2018

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Ensemble and single-molecule fluorescence spectroscopic study of the binding modes of the bis-benzimidazole derivative Hoechst 33258 with DNA

25 November 2018

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25 November 2018

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Sequence-specific minor groove binding by bis-benzimidazoles: water molecules in ligand recognition.

25 November 2018

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Volumetric properties of proteins

25 November 2018

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Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry

25 November 2018

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Thermodynamics of drug-DNA interactions

25 November 2018

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Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne

25 November 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Base-sequence specificity of Hoechst 33258 and DAPI binding to five (A/T)4 DNA sites with kinetic evidence for more than one high-affinity Hoechst 33258-AATT complex

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Kinetics of binding of Hoechst dyes to DNA studied by stopped-flow fluorescence techniques

25 November 2018

1 reference

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DNA minor-groove recognition by small molecules

25 November 2018

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Experimental precedent for the need to involve the primary hydration layer of DNA in lead drug design

25 November 2018

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A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity

25 November 2018

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Double-stranded DNA binding characteristics and subcellular distribution of a minor groove binding diphenyl ether bisbenzimidazole

25 November 2018

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Recent developments in sequence selective minor groove DNA effectors

25 November 2018

1 reference

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Hydration changes for DNA intercalation reactions

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Thermodynamics of nucleic acids and their interactions with ligands

25 November 2018

1 reference

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Intracellular osmotic action

25 November 2018

1 reference

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Energetics of DNA intercalation reactions

25 November 2018

1 reference

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Volumetric properties of nucleic acids

25 November 2018

1 reference

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X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution

25 November 2018

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Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution

25 November 2018

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DNA minor groove recognition by bis-benzimidazole analogues of Hoechst 33258: insights into structure-DNA affinity relationships assessed by fluorescence titration measurements

25 November 2018

1 reference

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The B-DNA dodecamer at high resolution reveals a spine of water on sodium

25 November 2018

1 reference

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Interaction of minor groove binding ligands with long AT tracts

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Specific binding of hoechst 33258 to the d(CGCAAATTTGCG)2 duplex: calorimetric and spectroscopic studies

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Designer DNA-binding drugs: the crystal structure of a meta-hydroxy analogue of Hoechst 33258 bound to d(CGCGAATTCGCG)2

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Use of electric linear dichroism and competition experiments with intercalating drugs to investigate the mode of binding of Hoechst 33258, berenil and DAPI to GC sequences

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Macromolecules and water: probing with osmotic stress

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Coupling of local folding to site-specific binding of proteins to DNA

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Crystal structure of d(CGCGAATTCGCG) complexed with propamidine, a short-chain homologue of the drug pentamidine

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

The different binding modes of Hoechst 33258 to DNA studied by electric linear dichroism

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Sequence-dependent effects in drug-DNA interaction: the crystal structure of Hoechst 33258 bound to the d(CGCAAATTTGCG)2 duplex

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Variability in DNA minor groove width recognised by ligand binding: the crystal structure of a bis-benzimidazole compound bound to the DNA duplex d(CGCGAATTCGCG)2

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

The interaction of intercalating drugs with nucleic acids

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Binding of a Hoechst dye to d(CGCGATATCGCG) and its influence on the conformation of the DNA fragment

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Binding of Hoechst 33258 to the minor groove of B-DNA

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Crystal structure of a berenil-dodecanucleotide complex: the role of water in sequence-specific ligand binding

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Molecular recognition between ligands and nucleic acids: DNA binding characteristics of analogs of Hoechst 33258 designed to exhibit altered base and sequence recognition

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Minor-groove recognition of the self-complementary duplex d(CGCGAATTCGCG)2 by Hoechst 33258: a high-field NMR study

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Binding characteristics of Hoechst 33258 with calf thymus DNA, poly[d(A-T)] and d(CCGGAATTCCGG): multiple stoichiometries and determination of tight binding with a wide spectrum of site affinities

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Protein solvation in allosteric regulation: a water effect on hemoglobin

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Hydration of DNA bases: analysis of crystallographic data

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Optical studies of the interaction of 33258 Hoechst with DNA, chromatin, and metaphase chromosomes

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Heat capacity and entropy changes in processes involving proteins

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158785

Heat capacity effects in protein folding and ligand binding: a re-evaluation of the role of water in biomolecular thermodynamics

25 November 2018

1 reference

12 December 2020

Determination of binding stoichiometry by the continuous variation method: the Job plot

1 reference

12 December 2020

Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro

1 reference

12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

12 December 2020

The role of water in protein-DNA interactions

1 reference

12 December 2020

Hydrostatic and osmotic pressure as tools to study macromolecular recognition

1 reference

12 December 2020

The osmotic sensitivity of netropsin analogue binding to DNA

1 reference

12 December 2020

A molecular thermodynamic view of DNA-drug interactions: a case study of 25 minor-groove binders

1 reference

12 December 2020

Volume errors in isothermal titration calorimetry

1 reference

12 December 2020

Raising water to new heights

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI051769X

1 reference

24 July 2017

0 references

1 reference