(Q34165727)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25211013%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency (English)

1 reference

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16 February 2020

1 reference

3

1 reference

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16 February 2020

Rafik Neme

4

1 reference

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16 February 2020

6

Harmit S Malik

1 reference

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16 February 2020

author name string

Richard N McLaughlin

1

1 reference

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16 February 2020

Janet M Young

2

1 reference

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16 February 2020

Holly A Wichman

5

1 reference

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16 February 2020

publication date

11 September 2014

1 reference

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16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25211013%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

10

1 reference

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16 February 2020

issue

9

1 reference

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16 February 2020

page(s)

e1004531

1 reference

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Creative Commons Attribution 4.0 International

16 February 2020

copyright license

start time

11 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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5 July 2018

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5 July 2018

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RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation

5 July 2018

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Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): another star phylogeny?

5 July 2018

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Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents

5 July 2018

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Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition

5 July 2018

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5 July 2018

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ECAT11/L1td1 is enriched in ESCs and rapidly activated during iPSC generation, but it is dispensable for the maintenance and induction of pluripotency

5 July 2018

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TimeTree2: species divergence times on the iPhone

5 July 2018

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L1TD1 is a marker for undifferentiated human embryonic stem cells

5 July 2018

1 reference

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

5 July 2018

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A molecular phylogeny of living primates

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

5 July 2018

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Origin and evolution of LINE-1 derived "half-L1" retrotransposons (HAL1)

5 July 2018

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Endogenous retroviruses in trophoblast differentiation and placental development

5 July 2018

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The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates

5 July 2018

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Transposable elements in the mammalian germline: a comfortable niche or a deadly trap?

5 July 2018

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The impact of retrotransposons on human genome evolution

5 July 2018

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5 July 2018

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Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene

5 July 2018

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5 July 2018

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Embryonic stem cells use ZFP809 to silence retroviral DNAs

5 July 2018

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Origin, antiviral function and evidence for positive selection of the gammaretrovirus restriction gene Fv1 in the genus Mus.

5 July 2018

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Molecular domestication of transposable elements: from detrimental parasites to useful host genes.

5 July 2018

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Transposable elements and the evolution of regulatory networks

5 July 2018

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Loss of LINE-1 activity in the megabats

5 July 2018

1 reference

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DNA transposons and the evolution of eukaryotic genomes

5 July 2018

1 reference

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5 July 2018

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Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting

5 July 2018

1 reference

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Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

5 July 2018

1 reference

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Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

5 July 2018

1 reference

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Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Repbase Update, a database of eukaryotic repetitive elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Not so different after all: a comparison of methods for detecting amino acid sites under selection

5 July 2018

1 reference

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5 July 2018

1 reference

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Retroviral capsid determinants of Fv1 NB and NR tropism.

5 July 2018

1 reference

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BLAST: at the core of a powerful and diverse set of sequence analysis tools

5 July 2018

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

LINE-mediated retrotransposition of marked Alu sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Origin of a substantial fraction of human regulatory sequences from transposable elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Molecular archeology of L1 insertions in the human genome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Alu-containing exons are alternatively spliced

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Adaptive evolution in LINE-1 retrotransposons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Initial sequencing and analysis of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Human L1 retrotransposition: cis preference versus trans complementation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

A single amino acid change in the murine leukemia virus capsid gene responsible for the Fv1(nr) phenotype

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Interspersed repeats and other mementos of transposable elements in mammalian genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

The age and evolution of non-LTR retrotransposable elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

PAML: a program package for phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Cloning of a new murine endogenous retrovirus, MuERV-L, with strong similarity to the human HERV-L element and with a gag coding sequence closely related to the Fv1 restriction gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Single amino acid changes in the murine leukemia virus capsid protein gene define the target of Fv1 resistance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Positional cloning of the mouse retrovirus restriction gene Fv1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Analysis of wild-derived mice for Fv-1 and Fv-2 murine leukemia virus restriction loci: a novel wild mouse Fv-1 allele responsible for lack of host range restriction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161310

Transposable elements and vertebrate protein diversity.

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004531

A tandem gene duplication followed by recruitment of a retrotransposon created the paralogous bucentaur gene (bcntp97) in the ancestral ruminant.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004531

The ORF1 protein encoded by LINE-1: structure and function during L1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004531

Automated phylogenetic detection of recombination using a genetic algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004531

Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004531

10.1371/JOURNAL.PGEN.1004531

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25211013%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25211013%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

25211013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25211013%20AND%20SRC:MED&resulttype=core&format=json