(Q34167650)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

title

Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

Nilesh Banavali

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

Alex MacKerell

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

author name string

Alexander D MacKerell

series ordinal

3

1 reference

PubMed ID

12506195

31 July 2017

language of work or name

English

0 references

publication date

27 December 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

16 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

volume

100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

page(s)

68-73

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

All-atom empirical potential for molecular modeling and dynamics studies of proteins

16 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

DNA methylation, imprinting and cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Altered DNA methylation: a secondary mechanism involved in carcinogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Cancer as an epigenetic disease: DNA methylation and chromatin alterations in human tumours

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Epigenetics: interaction of DNA methylation and chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

AdoMet-dependent methylation, DNA methyltransferases and base flipping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

The mechanism of DNA cytosine-5 methylation. Kinetic and mutational dissection of Hhai methyltransferase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Reconciling structure and function in HhaI DNA cytosine-C-5 methyltransferase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Mechanism of inhibition of DNA (cytosine C5)-methyltransferases by oligodeoxyribonucleotides containing 5,6-dihydro-5-azacytosine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Dynamic modes of the flipped-out cytosine during HhaI methyltransferase-DNA interactions in solution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

A structural basis for the preferential binding of hemimethylated DNA by HhaI DNA methyltransferase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Finding a basis for flipping bases.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

VMD: visual molecular dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

HhaI methyltransferase flips its target base out of the DNA helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

M.HhaI binds tightly to substrates containing mismatches at the target base

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Molecular dynamics simulations in biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Dynamics of activated processes in globular proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140885

Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

Base flipping in DNA: pathways and energetics studied with molecular dynamic simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

Energetics of ion conduction through the K+ channel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

Use of Oligodeoxyribonucleotides with Conformationally Constrained Abasic Sugar Targets To Probe the Mechanism of Base Flipping byHhaI DNA (Cytosine C5)-methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

First-principles calculation of the folding free energy of a three-helix bundle protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

A unified formulation of the constant temperature molecular dynamics methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0135427100

Kinetic and catalytic mechanism of HhaI methyltransferase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12506195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0135427100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12506195%20AND%20SRC:MED&resulttype=core&format=json

16 December 2019

1 reference