(Q34168141)

English

Genome-wide identification, evolutionary expansion, and expression profile of homeodomain-leucine zipper gene family in poplar (Populus trichocarpa).

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scholarly article

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Europe PubMed Central

31 July 2017

Genome-wide identification, evolutionary expansion, and expression profile of homeodomain-leucine zipper gene family in poplar (Populus trichocarpa). (English)

1 reference

Europe PubMed Central

31 July 2017

Populus trichocarpa

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author name string

Ruibo Hu

1

1 reference

Europe PubMed Central

31 July 2017

Xiaoyuan Chi

2

1 reference

Europe PubMed Central

31 July 2017

Guohua Chai

3

1 reference

Europe PubMed Central

31 July 2017

Yingzhen Kong

4

1 reference

Europe PubMed Central

31 July 2017

Guo He

5

1 reference

Europe PubMed Central

31 July 2017

Xiaoyu Wang

6

1 reference

Europe PubMed Central

31 July 2017

Dachuan Shi

7

1 reference

Europe PubMed Central

31 July 2017

Dongyuan Zhang

8

1 reference

Europe PubMed Central

31 July 2017

Gongke Zhou

9

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Europe PubMed Central

31 July 2017

language of work or name

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publication date

16 February 2012

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Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

7

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Europe PubMed Central

31 July 2017

e31149

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Europe PubMed Central

31 July 2017

2

1 reference

Europe PubMed Central

31 July 2017

copyright license

Creative Commons Attribution 4.0 International

16 February 2012

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April 2022 Public Data File from Crossref

copyright status

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1 reference

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The Populus class III HD ZIP, popREVOLUTA, influences cambium initiation and patterning of woody stems

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1 reference

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1 reference

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1 reference

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A comprehensive classification and evolutionary analysis of plant homeobox genes

1 reference

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5 July 2018

The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome

1 reference

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Identification and characterization of PgHZ1, a novel homeodomain leucine-zipper gene isolated from white spruce (Picea glauca) tissue

1 reference

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5 July 2018

The Arabidopsis homeodomain-leucine zipper II gene family: diversity and redundancy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

ATHB23, an Arabidopsis class I homeodomain-leucine zipper gene, is expressed in the adaxial region of young leaves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

NMPP: a user-customized NimbleGen microarray data processing pipeline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Gene expression omnibus: microarray data storage, submission, retrieval, and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Modeling gene and genome duplications in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

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Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

MicroRNA-directed cleavage of Nicotiana sylvestris PHAVOLUTA mRNA regulates the vascular cambium and structure of apical meristems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

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Splitting pairs: the diverging fates of duplicated genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Redox regulation of plant homeodomain transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Genesis: cluster analysis of microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Twilight-zone and canopy shade induction of the Athb-2 homeobox gene in green plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The arabidopsis ATHB-8 HD-zip protein acts as a differentiation-promoting transcription factor of the vascular meristems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

REVOLUTA regulates meristem initiation at lateral positions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

START: a lipid-binding domain in StAR, HD-ZIP and signalling proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Two dehydration-inducible transcripts from the resurrection plant Craterostigma plantagineum encode interacting homeodomain-leucine zipper proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

Homeodomain-DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

The rapid generation of mutation data matrices from protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281058

5 July 2018

DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Characterization of homeodomain-leucine zipper genes in the fern Ceratopteris richardii and the evolution of the homeodomain-leucine zipper gene family in vascular plants.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Sugar-dependent alterations in cotyledon and leaf development in transgenic plants expressing the HDZhdip gene ATHB13.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

The Arabidopsis thaliana homeobox gene ATHB5 is a potential regulator of abscisic acid responsiveness in developing seedlings

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Structure and expression of the Arabidopsis thaliana homeobox gene Athb-12.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

The homeobox genes ATHB12 and ATHB7 encode potential regulators of growth in response to water deficit in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

The Arabidopsis homeobox gene, ATHB16, regulates leaf development and the sensitivity to photoperiod in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

HAHB10, a sunflower HD-Zip II transcription factor, participates in the induction of flowering and in the control of phytohormone-mediated responses to biotic stress.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

HD-zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Regulation of HD-ZIP III Genes by MicroRNA 165.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Entopically additive expression of GLABRA2 alters the frequency and spacing of trichome initiation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Evolution of the class III HD-Zip gene family in land plants.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Expansion and diversification of the Populus R2R3-MYB family of transcription factors

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Evidence that rice and other cereals are ancient aneuploids

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

[GSDS: a gene structure display server].

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031149

21 January 2018

Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/22359569

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22359569

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/22359569

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IFL1, a gene regulating interfascicular fiber differentiation in Arabidopsis, encodes a homeodomain-leucine zipper protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/22359569

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The homeobox gene GLABRA2 affects seed oil content in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22359569

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0031149

1 reference

Europe PubMed Central

31 July 2017

2012PLoSO...731149H

0 references

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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