(Q34168172)

31 July 2017

DNA bending by small, mobile multivalent cations (English)

1 reference

31 July 2017

I Rouzina

1

1 reference

PubMed ID

9635768

31 July 2017

V A Bloomfield

series ordinal

2

1 reference

PubMed ID

9635768

31 July 2017

language of work or name

English

0 references

publication date

1 June 1998

1 reference

31 July 2017

1 reference

31 July 2017

74

1 reference

31 July 2017

6

1 reference

31 July 2017

3152-3164

1 reference

The Potential of an Infinite Rod-Like Molecule and the Distribution of the Counter Ions

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Ionic effects on the elasticity of single DNA molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Stretching DNA with optical tweezers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Local DNA stretching mimics the distortion caused by the TATA box-binding protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Modelling extreme stretching of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Neomycin, spermine and hexaamminecobalt (III) share common structural motifs in converting B- to A-DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

The high resolution crystal structure of the DNA decamer d(AGGCATGCCT)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Crystal structure of CATGGCCATG and its implications for A-tract bending models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Induction of B-A transitions of deoxyoligonucleotides by multivalent cations in dilute aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Rotational dynamics of hexaamminecobalt(III) bound to oligomeric DNA: correlation with cation-induced structural transitions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Counter-ion condensation and system dimensionality.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

An electro-optical study of the mechanisms of DNA condensation induced by spermine.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Spermine-DNA interactions: a theoretical study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Molecular dynamics of spermine-DNA interactions: sequence specificity and DNA bending for a simple ligand

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Theoretical modeling of DNA-monocationic lexitropsin complexation: influence of ligand binding on DNA curvature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Molecular mechanics of the interactions of spermine with DNA: DNA bending as a result of ligand binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Ion distributions around DNA and other cylindrical polyions: theoretical descriptions and physical implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

The phage 434 Cro/OR1 complex at 2.5 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Comparison of different approaches for calculation of polyelectrolyte free energy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Relative affinities of divalent polyamines and of their N-methylated analogs for helical DNA determined by sodium-23 NMR

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Hexaamminecobalt(III) binding environments on double-helical DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Ca2+ binding environments on natural and synthetic polymeric DNA's

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Myc/Max and other helix-loop-helix/leucine zipper proteins bend DNA toward the minor groove

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Competitive electrostatic binding of charged ligands to polyelectrolytes: practical approach using the non-linear Poisson-Boltzmann equation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Monte Carlo and Poisson-Boltzmann calculations of the fraction of counterions bound to DNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299655

Localized interaction of the polyamine methylspermidine with double-helical DNA as monitored by 1H NMR self-diffusion measurements

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Precollapse of T7 DNA by spermidine at low ionic strength: a linear dichroism and intrinsic viscosity study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Interpretation of 25Mg spin relaxation in Mg-DNA solutions: temperature variation and chemical exchange effects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Looking into the grooves of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

A reexamination of25Mg2+nmr in DNA solution: Site heterogeneity and cation competition effects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Structure of a B-DNA dodecamer. III. Geometry of hydration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Influence of drug binding on DNA flexibility: a normal mode analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Structural basis for stabilization of Z-DNA by cobalt hexaammine and magnesium cations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Stabilization of the tertiary structure of yeast phenylalanine tRNA by [Co(NH3)6]3+. X-ray evidence for hydrogen bonding to pairs of guanine bases in the major groove

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

DNA bending by Fos and Jun: the flexible hinge model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Ordered water structure around a B-DNA dodecamer. A quantitative study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

The flexibility of the nucleic acids: (III). The interaction of an aliphatic diamine, putrescine, with flexible B-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

The flexibility of the nucleic acids: (II). The calculation of internal energy and applications to mononucleotide repeat DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Different Binding Modes of Spermine to A-T and G-C Base Pairs Modulate the Bending and Stiffening of the DNA Double Helix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Influence of DNA length on spermine-induced condensation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Counterion exchange reactions on DNA: Monte Carlo and Poisson-Boltzmann analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Equilibrium dialysis study of binding of hexammine cobalt(III) to DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Dynamics of DNA condensation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Structure and dynamics of double helices in solution: modes of DNA bending

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Nuclear magnetic resonance studies of polyamine binding to a defined DNA sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

A theoretical study of the sequence specificity in binding of lexitropsins to B-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Spermine-nucleic acid interactions: a theoretical study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Interaction of spermine with different forms of DNA. A conformational study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2978021-X

Two aspects of DNA polymorphism and microheterogeneity: molecular electrostatic potential and steric accessibility

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9635768

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(98)78021-X

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

9635768