(Q39719585)

14 September 2017

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling (English)

1 reference

14 September 2017

Nicholas R. Cozzarelli

series ordinal

3

object named as

N R Cozzarelli

1 reference

14 September 2017

V V Rybenkov

1

1 reference

PMCID

146597

14 September 2017

A V Vologodskii

series ordinal

2

1 reference

PMCID

146597

14 September 2017

language of work or name

English

0 references

publication date

1 April 1997

1 reference

14 September 2017

Nucleic Acids Research

1 reference

14 September 2017

25

1 reference

14 September 2017

7

1 reference

14 September 2017

1412-1418

1 reference

Effects of Na+ and Mg2+ on the structures of supercoiled DNAs: comparison of simulations with experiments

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Effect of bending strain on the torsion elastic constant of DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Probability of DNA knotting and the effective diameter of the DNA double helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Knotting of a DNA chain during ring closure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Torison dynamics and depolarization of fluorescence of linear macromolecules. II. Fluorescence polarization anisotropy measurements on a clean viral phi 29 DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Unwinding of double-stranded DNA helix by dehydration

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Energetics of B-to-Z transition in DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Torsional and bending rigidity of the double helix from data on small DNA rings

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Sequence-dependent energetics of the B-Z transition in supercoiled DNA containing nonalternating purine-pyrimidine sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Structure and reactions of closed duplex DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Conformational fluctuations of DNA helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Fluctuations in superhelical DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The helical repeat of DNA at high temperature

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Conformational and thermodynamic properties of supercoiled DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The number of superhelical turns in native Virion SV40 DNA and Minicol DNA determined by the band counting method

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Modeling of long-range electrostatic interactions in DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Monte Carlo computation of the supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and knotted circular DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

SV40 DNA: quantitative conversion of closed circular to open circular form by an ethidium bromide-restricted endonuclease.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Osmotic pressure of DNA solutions and effective diameter of the double helix

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Topological distributions and the torsional rigidity of DNA. A Monte Carlo study of DNA circles.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The helical repeat of double-stranded DNA varies as a function of catenation and supercoiling

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Variance of writhe for wormlike DNA rings with excluded volume.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Structure of plectonemically supercoiled DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Competing B-Z and helix-coil conformational transitions in supercoiled plasmid DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Energetics of DNA twisting. II. Topoisomer analysis.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

DNA supercoiling and its effects on DNA structure and function.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Interactions of highly charged colloidal cylinders with applications to double-stranded

20 August 2018

1 reference

12 December 2020

Supercoiling in closed circular DNA: dependence upon ion type and concentration

1 reference

12 December 2020

The statistics of superhelicity

1 reference

12 December 2020

Purification and characterization of wheat germ DNA topoisomerase I (nicking-closing enzyme)

1 reference

12 December 2020

Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition

1 reference

12 December 2020

Catenation of DNA rings by topoisomerases. Mechanism of control by spermidine

1 reference

12 December 2020

Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling

1 reference

12 December 2020

Rotational dynamics of DNA from 10(-10) to 10(-5) seconds: comparison of theory with optical experiments

1 reference

12 December 2020

An assessment of the Z-DNA forming potential of alternating dA-dT stretches in supercoiled plasmids

1 reference

12 December 2020

Moments for DNA topoisomers: the helical wormlike chain

1 reference

12 December 2020

Counterion exchange reactions on DNA: Monte Carlo and Poisson-Boltzmann analysis

1 reference

12 December 2020

Variation of the average rotation angle of the DNA helix and the superhelical turns of covalently closed cyclic lambda DNA

1 reference

12 December 2020

The energetics of the B-Z transition in DNA

1 reference

12 December 2020

Effect of excluded volume on topological properties of circular DNA

1 reference

12 December 2020

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat

1 reference

12 December 2020

Computer simulation of DNA supercoiling

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/25.7.1412

1 reference

14 September 2017

1 reference

14 September 2017

1 reference

PMCID

146597