(Q34171426)

31 July 2017

title

Brownian dynamics simulation of DNA condensation (English)

1 reference

31 July 2017

Sottas PE

1

1 reference

31 July 2017

Larquet E

series ordinal

2

1 reference

31 July 2017

Stasiak A

series ordinal

3

1 reference

31 July 2017

Dubochet J

series ordinal

4

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 October 1999

1 reference

31 July 2017

number of pages

13

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

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31 July 2017

volume

77

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31 July 2017

issue

4

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31 July 2017

page(s)

1858-1870

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Salt-dependent DNA superhelix diameter studied by small angle neutron scattering measurements and Monte Carlo simulations

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Electrostatic potential of B-DNA: effect of interionic correlations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

DNA condensation by multivalent cations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

A gel electrophoresis study of the competitive effects of monovalent counterion on the extent of divalent counterions binding to DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

5 July 2018

1 reference

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Probability of DNA knotting and the effective diameter of the DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Knotting of a DNA chain during ring closure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Conformational and thermodynamic properties of supercoiled DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Condensation of supercoiled DNA induced by MnCl2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Modeling of long-range electrostatic interactions in DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

The influence of salt on the structure and energetics of supercoiled DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Force balances in systems of cylindrical polyelectrolytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Ion effects on ligand-nucleic acid interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Action at a distance in supercoiled DNA: effects of sequence on slither, branching, and intramolecular concentration

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Polyelectrolyte effects in DNA condensation by polyamines.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Cationic liposome-mediated transfection.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300469

Statistical mechanics of supercoiled DNA

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

THE EFFECTS OF SHAPE ON THE INTERACTION OF COLLOIDAL PARTICLES

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

Dynamics of DNA condensation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

Light-scattering study of DNA condensation: competition between collapse and aggregation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

X-ray diffraction studies on cation-collapsed DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

Interactions of polyelectrolytes with simple electrolytes. 3. The binding of magnesium ion by deoxyribonucleic acid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

Interactions of highly charged colloidal cylinders with applications to double-stranded

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

On exact solutions to the cylindrical Poisson-Boltzmann equation with applications to polyelectrolytes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977029-3

10.1016/S0006-3495(99)77029-3

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference