(Q34181679)

31 July 2017

title

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach (English)

1 reference

31 July 2017

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2

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31 July 2017

Michael Sammeth

3

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Marvin Mundry

object named as

Marvin Mundry

series ordinal

1

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author name string

Philine G D Feulner

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

27 February 2012

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31 July 2017

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31 July 2017

volume

7

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31 July 2017

issue

2

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31 July 2017

page(s)

e31410

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Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

27 February 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes

5 July 2018

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A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes

5 July 2018

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Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome

5 July 2018

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Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh].

5 July 2018

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De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Sequence information on simple sequence repeats and single nucleotide polymorphisms through transcriptome analysis of mungbean.

5 July 2018

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Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus.

5 July 2018

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Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

5 July 2018

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Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing

5 July 2018

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Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance.

5 July 2018

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A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

5 July 2018

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Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures

5 July 2018

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Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes

5 July 2018

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Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

5 July 2018

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Tissue-specific transcriptomics of the exotic invasive insect pest emerald ash borer (Agrilus planipennis).

5 July 2018

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Comparing de novo assemblers for 454 transcriptome data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS‐FLX 454 pyrosequencing and its application for studies of herbicide target‐site genes

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Next generation transcriptomes for next generation genomes using est2assembly.

5 July 2018

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Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

5 July 2018

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Accurate whole human genome sequencing using reversible terminator chemistry

5 July 2018

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5 July 2018

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5 July 2018

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Variation within and among species in gene expression: raw material for evolution

5 July 2018

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Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

CAP3: A DNA sequence assembly program

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Alternative splicing: a ubiquitous mechanism for the generation of multiple protein isoforms from single genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

A computer model for hydrodynamic shearing of DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288049

Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

New approach for the study of mite reproduction: The first transcriptome analysis of a mite, Phytoseiulus persimilis (Acari: Phytoseiidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

Teladorsagia circumcincta: the transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

Transcriptional plasticity of a soil arthropod across different ecological conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

Zipf's law in gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031410

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22384018

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0031410

1 reference

31 July 2017

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1 reference

31 July 2017

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