(Q34183483)

31 July 2017

Atomically detailed simulations of helix formation with the stochastic difference equation (English)

1 reference

31 July 2017

Atomically Detailed Simulations of Helix Formation with the Stochastic Difference Equation (English)

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)74713-4

25 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

protein secondary structure

25 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

25 March 2024

molecular model

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

25 March 2024

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)74713-4

25 March 2024

author name string

Ron Elber

series ordinal

2

1 reference

31 July 2017

Alfredo E. Cárdenas

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

25 March 2024

language of work or name

English

0 references

publication date

1 November 2003

1 reference

full work available at URL

31 July 2017

http://www.cell.com/article/S0006349503747134/pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

https://europepmc.org/articles/PMC1303571

25 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

https://europepmc.org/articles/PMC1303571?pdf=render

25 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581195

https://api.elsevier.com/content/article/PII:S0006349503747134?httpAccept=text/xml

25 March 2024

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)74713-4

https://api.elsevier.com/content/article/PII:S0006349503747134?httpAccept=text/plain

25 March 2024

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)74713-4

25 March 2024

1 reference

31 July 2017

85

1 reference

31 July 2017

5

1 reference

31 July 2017

2919-2939

1 reference

Peptide folding simulations

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

The complete folding pathway of a protein from nanoseconds to microseconds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Absolute comparison of simulated and experimental protein-folding dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Long time dynamic simulations: exploring the folding pathways of an Alzheimer's amyloid Abeta-peptide

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Protein and peptide folding explored with molecular simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Molecular dynamics simulations of the protein unfolding/folding reaction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Long time dynamics of complex systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Helix formation via conformation diffusion search

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Helix nucleation kinetics from molecular simulations in explicit solvent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Structural, dynamical, and electronic properties of amorphous silicon: An ab initio molecular dynamics study.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Kinetics of cytochrome C folding: atomically detailed simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Breaking non-native hydrophobic clusters is the rate-limiting step in the folding of an alanine-based peptide

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

Direct computation of long time processes in peptides and proteins: reaction path study of the coil-to-helix transition in polyalanine.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303571

First-principles calculation of the folding free energy of a three-helix bundle protein

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

Pairwise solute descreening of solute charges from a dielectric medium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. I. Formulation and benchmark test

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

Packing structures and transitions in liquids and solids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

Theory and applications of the generalized Born solvation model in macromolecular simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974713-4

A new force field for molecular mechanical simulation of nucleic acids and proteins

7 January 2021

series ordinal

48

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)74713-4

25 March 2024

Identifiers

1 reference

31 July 2017

1 reference

31 July 2017

1 reference