(Q34187603)

31 July 2017

title

Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots (English)

1 reference

31 July 2017

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2

Amos Maritan

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31 July 2017

3

Andrzej Stasiak

1 reference

31 July 2017

Alessandro Flammini

1

1 reference

31 July 2017

language of work or name

English

0 references

publication date

23 August 2004

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31 July 2017

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31 July 2017

volume

87

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31 July 2017

issue

5

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31 July 2017

page(s)

2968-2975

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Scaling behavior of random knots

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

A topological view of the replicon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

DNA topoisomerases: structure, function, and mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Mechanism of topology simplification by type II DNA topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Varying levels of positive and negative supercoiling differently affect the efficiency with which topoisomerase II catenates and decatenates DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Sedimentation and electrophoretic migration of DNA knots and catenanes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Simplification of DNA topology below equilibrium values by type II topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Probability of DNA knotting and the effective diameter of the DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Knotting of a DNA chain during ring closure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Monte Carlo computation of the supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and knotted circular DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Duplex DNA knots produced by Escherichia coli topoisomerase I. Structure and requirements for formation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Investigation of viral DNA packaging using molecular mechanics models.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304770

Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology

28 October 2018

1 reference

12 December 2020

Conformational and thermodynamic properties of supercoiled DNA

1 reference

12 December 2020

Determination of the absolute handedness of knots and catenanes of DNA

1 reference

12 December 2020

Tightness of random knotting

1 reference

12 December 2020

Flory-type theory of a knotted ring polymer

1 reference

12 December 2020

A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases

1 reference

12 December 2020

10.1529/BIOPHYSJ.104.045864

Identifiers

DOI

1 reference

release_exunvzoatvhvne2cjsikqd5iue

31 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/exunvzoatvhvne2cjsikqd5iue

24 November 2022

mapped directly with Wikidata item

PMC publication ID

1304770

1 reference

31 July 2017

1 reference